G136433


Basic Information

Item Value
gene id G136433
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21360839 ~ 21361880 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU161109
CCTTGGATAATACATGAAGTATTCATTGATTCTTTCCATCTTTTGTTCTCTCTTACTGGACAGGCCAGCTCCAGGAGCGAGCCAGCCACTTCGGCGCTGTCCATGTGGATGCAGTTTGTCTCTTGTTGAGAAGTACTGCTGTTGTCATCCTGCTGGCTGAACTCCTGCAATGCCTCAGGCCCTTTGCTAGCTAGTGACTCCAGGAACTCTTTCATGCGATGCGGTGGGATGCTGCGTGCTTTCACCTTCACCAGCTCCTCAAACGGCACGGAGCCCTCCATGGAGTTATCAAACACTCCAGCATCAACAGCATCAAAACGTGCTTCTTGTTAGCCAGCTCGTTACCTAATTTACCTGTCTTTGCCTCTCCTGGCTCTTTATAAGAACAGTTTCGCACTAGCTGCATTAGAAGAAGAGAAAGTAAATGAATGTCAAGTCCACTTCTCAGTCTGTTTTGCTTCGTTTGGGCTgtcaacaatgttttttttttctttatctgacTCACTAAGGCGCCCTAAGGCGCCATTTT

Function

NR:

description
myelin-associated glycoprotein-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161109 True 529 lncRNA 0.47 2 21360839 21361880

Neighbor

gene id symbol gene type direction distance location
LOC113533443 LOC108265758 coding upstream 5556 21338426 ~ 21355283 (+)
prickle2a prickle2a,LOC108265757,LOC108412058,LOC107704215,LOC107570338,LOC107708258,LOC107744819 coding upstream 46667 21276687 ~ 21314172 (+)
LOC113533151 NA coding upstream 110214 21223634 ~ 21250625 (+)
LOC113533118 LOC108265572 coding upstream 174915 21075827 ~ 21185924 (+)
gabrd gabrd,LOC107690714,LOC107711789,LOC107739653,LOC107684467 coding upstream 300539 21034464 ~ 21060300 (+)
nadka nadk coding downstream 6926 21368806 ~ 21394676 (+)
LOC113533389 slc35e2b,s35e2,LOC108265386 coding downstream 55012 21416892 ~ 21435953 (+)
cdk11b LOC107575169,LOC107718258,LOC108265382 coding downstream 76370 21438250 ~ 21456723 (+)
ubiad1 ubiad1,LOC107718257,LOC107572294 coding downstream 119501 21481381 ~ 21484957 (+)
mib2 mib2 coding downstream 127504 21489384 ~ 21562570 (+)
G136429 NA non-coding upstream 13678 21346845 ~ 21347161 (+)
G136056 NA non-coding upstream 395371 20947304 ~ 20965468 (+)
G136057 NA non-coding upstream 421769 20937123 ~ 20939070 (+)
G135643 LOC107737118 non-coding upstream 1346069 20014522 ~ 20014770 (+)
G135641 NA non-coding upstream 1348072 20012567 ~ 20012767 (+)
G136466 NA non-coding downstream 312978 21674858 ~ 21693702 (+)
G136532 NA non-coding downstream 463109 21824989 ~ 21825322 (+)
G136544 NA non-coding downstream 477752 21839632 ~ 21839852 (+)
G137017 NA non-coding downstream 786743 22148623 ~ 22149777 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding downstream 942849 22304729 ~ 22307615 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 612983 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 918648 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 1175221 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 1458472 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 1858196 19487487 ~ 19502643 (+)
LOC113533123 LOC108265628 other downstream 419343 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 463802 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 730715 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 1145746 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 1232654 22594534 ~ 22636989 (+)

Expression


Co-expression Network