LOC113533123 (LOC108265628)



Basic Information


Item Value
gene id LOC113533123
gene name LOC108265628
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21781223 ~ 21797808 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU161219
TCCTTAACTCCTTACCATTACCAGAGTGCTCGTTTTCATTAATGCTGTATACCTCAAATGGTTCAAGTTGTTTCTGGCCCCAACCCGTCCTTATCAAGCATTTCTCCAGTTCCATTAAAATTATGTAGAATCTGAAAAAACGGTAAAGTATTGAGTACTGTTGtactgaaatgtttaactgtgTATAGGCGCAACTTTCTCATGTTGTAACCTATGACCTCAGCTCTTGGTAGTGTCATTTGACCACATGCTCAAAAATGATCACGCATACACCATGAATGCATCTTCATTTATGAGTAGTGATATTTTTACAGTATTATTTGTACGTTTTCTCAAAACTGCAGGCAGTGGAAAATCAGCAGGAAGGGTTCTGTGCTAGTAAAATAGAAAGAGGCTGTAGAAGACCATTGAGCATGGCCCTCAGCCCTTAACTGCTGTGCTATGTGTGtagattatatttttaatataatataataaagaataTTAAGTAATAATGATTGAGatccattttatttctttgctgtgaatgtgtg
>TU161220
TCCTTAACTCCTTACCATTACCAGAGTGCTCGTTTTCATTAATGCTGTATACCTCAAATGGTTCAAGTTGTTTCTGGCCCCAACCCGTCCTTATCAAGCATTTCTCCAGTTCCATTAAAATTATGTAGAATCTGAAAAAACGGTAAAGTATTGAGTACTGTTGtactgaaatgtttaactgtgTATAGGCGCAACTTTCTCATGTTGTAACCTATGACCTCAGCTCTTGGTAGTGTCATTTGACCACATGCTCAAAAATGATCACGCATACACCATGAATGCATCTTCATTTATGAGTAGTGATATTTTTACAGTATTATTTGTACGTTTTCTCAAAACTGCAGGCAGTGGAAAATCAGCAGGAAGGGTTCTGTGCTAGTAAAATAGAAAGAGGCTGTAGAAGACCATTGAGCA
>XM_034306992.1
CACGCTTGAAACCACCACTAACCGCATCTTCAGGTTTACAGTAGACTGAGCAGGGCGACATGAAGGAAGTCGACTGTACAGCCGGCTCTGTGACTTTGTTCCACTTGGTGGGGAATCTGTCGCGTCTTAATGCTCCTGATAGTCACTAAACATCATGTGATTTTTGGACAGAACGTCGTTAAAACACCGGAAACAGGTCCAATGCGTGGACGAGGCGTGATCACGTGTGCAGTCGTCGCTCTCCACTGGGTCCTTCTCGGGTCTGCTCTCGAGACCCACCGACCACCAAATGACCTCGAGATCAGAGAGAAATGGTCCAGTGTTGACAAGCAGCAGATCTTGCCATGGATGAACCTCTCAACGATTTTGGTCAGCGGTCATGATGCGTGTGTGCATCTGCATCTACGCATAAAGCCCCTGTCAGCCAATAAAACCCTACGGATCGAGTTCACTGAATTAGCAATTAGAAATTTCCGCACTCTTTTGATCTGGAGAGGTCGTCATGGCAACAACACTATCCGGTGGAAACATTTGTTTGATGACCGCAGTAGGAAGGTTAGAATCAGAAATCTGTCTTCCATCAATAAACATCTGGATGTCCGAAGAGAACGTGTGTGGGAGTTGCAGTATAAGTGTTTTATGGCCCAGGTGGGCTATACTGTCCATGTGGTTGTGTATGACTTCAACCGAACGCTCATTACCGACTCATACACTGTAAAGCGCCCACCAGGAGTTGCTTCCAGTTTCTTGCCACTAGAAGACAAAGTACCTGTGTATAAAGTGACATTGGATATATCTGCTAAACGGTTTATTGTTGACATGGAGGCAGGCCAAAAAGTGAACGTGAGGTTATGCTACGAAAACAAAGCAGTGTGTAATGGAAAAATATCTAATATGATCAATACTGATCTTAATCGCACAGTCACGTTAAATTTTCCTTATTTGGTGCCCTGTTTATGCGTGCAGATGTATTACACTGCAGTCGATGCCAGAAGACACACCACCTGTCCACTAAAAGACAAAATACTGCCGGGAGGTGGAGAAGTGTTGTCCAGCAGCTCACTGCAGCTCTTTGGTAGCTCACTTCTCAAATGGAAGCATCTTTGCCCCTCGGTCCAGTTCGAACCTGCCGTCTCTCTCTGCTGGCAACATACCAGAAACCACTCACACTGTGTTTCTGTGCAAAACTCCACCCTGCACATGACAGACCTGaaatacaATGTGTCTGATGTAGACAAGCACGCCCACATGTGTTTGAAGttTGTTCTGAATGGCAGCCATCAAGTCTTCTGTCCCTTCAGTTCAGGAGATTTATCTGAATGGGATGTTACAGTGGTTCCTGGGTCTTGGCATCTGTATGTACGATTGTCCTCCAGTATCCCAGCATCCTTTGCTGCCCAGCTCTGTGTGGAAGAAGGTGGAGCATGTGTCGTGAAAGAAAATGTGCACACTGTTCAGACAGAAGAAGGTGCTAGAGACGTGGAACTGACTGTGCCTCTTTCCTTTTTCACCTCACGactgtgtgtgcaggtGTGGCGGTCTGAGCCTGCTCTCCGTGGAAGGAGAATCATATGTCCTGATTATACTCACAGGAGATGGGGTCTTATTGCTGCTGCTTCACTGGCTCTCCTGGTTGCCATAACAACAGTGGGCATCTTCACCTACAAGTTGATCAAACGGCAGACATCAGTATGGCGCTCGGCTGAGAGAAAACCTGTTTTGCTGGTCTGCTCCTCTGACGAAATAAGTCATGTTTCGGCTGTGTGTGCTCTAGCCTACGGCCTGCAGGAGGAGCTGCGCATGGACGTGCGCCTGGCTCAGTGGGCACACTGCAGCACTCAGACCTCTCTGGCACAACTGGGCCCTGCCCCCTGGCTCTATGGCCAGTGCCAGCAAGTGCACAGCGTAGGTGGCATGGTGCTCATAGCCTGGAGCCCTAAAGCCCAGCAGACTTTCCTCacatggagggagagagagagtagtggAAAAGTGGACAAGGaacagaaagacaaaacagaAGAATGGAGGGATAAACAGGGACAGAGTCAGGCAGAGAGCGAGTCTTCtatcacagctccagtgtttAATGCCAGCCTCATAAGCATGTGGGCGGGACTCCAGAGCGAGAGGCGTGGTCAAGGATTTGGTCTTGTGTGTTTCCGAGGGTTAAGTGGAACAAGGTGTATTCCGAAGGAGCTCAGAGGCATTCGGAGATACTGCCTTCCTAGAGATCTGTCAAACCTGATACACGAACTGGATGTAAATGTACATGGGCCAAGAAGCAGGGCCCAAAACATGAGTAGTTGGTGCTGTTGGCCCCGCCTTTTCTCCAAAGGACTGTCTTTCTGGTTGTCGCAGAGGCTCGCTCAGAGACTGGACGCATGGCTTCCTCAGACAGCAGCGAAGCCAGACAGGAAGCGTCTTCCGAAACCATCACATAAAGCTGCCAGCGAAAAGACGTTAAAGAAAAggatgaaaaagagaaagaaaagaagggaaaattTCAAATGTCAACATGCAGGGCCGGACAAAAATGTAGAATGTAATCCGGTCACACAGAAACCGCTACTAGCGTAATTTATGCTTTTAGAGCTACACATTTCGAGTGGACAAAATGGACAAGGTGGGGGGTGGTGGGGGGTGAAGGTGGGAGGTGGTTGGGTTGGAATGGGGGGATCAATTTTACATTGACTGAATGACATCCTTAACTCCTTACCATTACCAGAGTGCTCGTTTTCATTAATGCTGTATACCTCAAATGGTTCAAGTTGTTTCTGGCCCCAACCCGTCCTTATCAAGCATTTCTCCAGTTCCATTAAAATTATGTAGAATCTGAAAAAACGGTAAAGTATTGAGTACTGTTGtactgaaatgtttaactgtgTATAGGCGCAACTTTCTCATGTTGTAACCTATGACCTCAGCTCTTGGTAGTGTCATTTGACCACATGCTCAAAAATGATCACGCATACACCATGAATGCATCTTCATTTATGAGTAGTGATATTTTTACAGTATTATTTGTACGTTTTCTCAAAACTGCAGGCAGTGGAAAATCAGCAGGAAGGGTTCTGTGCTAGTAAAATAGAAAGAGGCTGTAGAAGACCATTGAGCATGGCCCTCAGCCCTTAACTGCTGTGCTATGTGTGtagattatatttttaatataatataataaagaataTTAAGTAATAA
>XM_034306993.1
ACACGCTTGAAACCACCACTAACCGCATCTTCAGGTTTACAGTAGACTGAGCAGGGCGACATGAAGGAAGTCGACTGTACAGCCGGCTCTGTGACTTTGTTCCACTTGGTGGGGAATCTGTCGCGTCTTAATGCTCCTGATAGTCACTAAACATCATGTGATTTTTGGACAGAACGTCGTTAAAACACCGGAAACAGGTCCAATGCGTGGACGAGGCGTGATCACGTGTGCAGTCGTCGCTCTCCACTGGGTCCTTCTCGGGTCTGCTCTCGAGACCCACCGACCACCAAATGACCTCGAGATCAGAGAGAAATGGTCCAGTGTTGACAAGCAGCAGATCTTGCCATGGATGAACCTCTCAACGATTTTGGTCAGCGGTCATGATGCGTGTGTGCATCTGCATCTACGCATAAAGCCCCTGTCCAATAAAACCCTACGGATCGAGTTCACTGAATTAGCAATTAGAAATTTCCGCACTCTTTTGATCTGGAGAGGTCGTCATGGCAACAACACTATCCGGTGGAAACATTTGTTTGATGACCGCAGTAGGAAGGTTAGAATCAGAAATCTGTCTTCCATCAATAAACATCTGGATGTCCGAAGAGAACGTGTGTGGGAGTTGCAGTATAAGTGTTTTATGGCCCAGGTGGGCTATACTGTCCATGTGGTTGTGTATGACTTCAACCGAACGCTCATTACCGACTCATACACTGTAAAGCGCCCACCAGGAGTTGCTTCCAGTTTCTTGCCACTAGAAGACAAAGTACCTGTGTATAAAGTGACATTGGATATATCTGCTAAACGGTTTATTGTTGACATGGAGGCAGGCCAAAAAGTGAACGTGAGGTTATGCTACGAAAACAAAGCAGTGTGTAATGGAAAAATATCTAATATGATCAATACTGATCTTAATCGCACAGTCACGTTAAATTTTCCTTATTTGGTGCCCTGTTTATGCGTGCAGATGTATTACACTGCAGTCGATGCCAGAAGACACACCACCTGTCCACTAAAAGACAAAATACTGCCGGGAGGTGGAGAAGTGTTGTCCAGCAGCTCACTGCAGCTCTTTGGTAGCTCACTTCTCAAATGGAAGCATCTTTGCCCCTCGGTCCAGTTCGAACCTGCCGTCTCTCTCTGCTGGCAACATACCAGAAACCACTCACACTGTGTTTCTGTGCAAAACTCCACCCTGCACATGACAGACCTGaaatacaATGTGTCTGATGTAGACAAGCACGCCCACATGTGTTTGAAGttTGTTCTGAATGGCAGCCATCAAGTCTTCTGTCCCTTCAGTTCAGGAGATTTATCTGAATGGGATGTTACAGTGGTTCCTGGGTCTTGGCATCTGTATGTACGATTGTCCTCCAGTATCCCAGCATCCTTTGCTGCCCAGCTCTGTGTGGAAGAAGGTGGAGCATGTGTCGTGAAAGAAAATGTGCACACTGTTCAGACAGAAGAAGGTGCTAGAGACGTGGAACTGACTGTGCCTCTTTCCTTTTTCACCTCACGactgtgtgtgcaggtGTGGCGGTCTGAGCCTGCTCTCCGTGGAAGGAGAATCATATGTCCTGATTATACTCACAGGAGATGGGGTCTTATTGCTGCTGCTTCACTGGCTCTCCTGGTTGCCATAACAACAGTGGGCATCTTCACCTACAAGTTGATCAAACGGCAGACATCAGTATGGCGCTCGGCTGAGAGAAAACCTGTTTTGCTGGTCTGCTCCTCTGACGAAATAAGTCATGTTTCGGCTGTGTGTGCTCTAGCCTACGGCCTGCAGGAGGAGCTGCGCATGGACGTGCGCCTGGCTCAGTGGGCACACTGCAGCACTCAGACCTCTCTGGCACAACTGGGCCCTGCCCCCTGGCTCTATGGCCAGTGCCAGCAAGTGCACAGCGTAGGTGGCATGGTGCTCATAGCCTGGAGCCCTAAAGCCCAGCAGACTTTCCTCacatggagggagagagagagtagtggAAAAGTGGACAAGGaacagaaagacaaaacagaAGAATGGAGGGATAAACAGGGACAGAGTCAGGCAGAGAGCGAGTCTTCtatcacagctccagtgtttAATGCCAGCCTCATAAGCATGTGGGCGGGACTCCAGAGCGAGAGGCGTGGTCAAGGATTTGGTCTTGTGTGTTTCCGAGGGTTAAGTGGAACAAGGTGTATTCCGAAGGAGCTCAGAGGCATTCGGAGATACTGCCTTCCTAGAGATCTGTCAAACCTGATACACGAACTGGATGTAAATGTACATGGGCCAAGAAGCAGGGCCCAAAACATGAGTAGTTGGTGCTGTTGGCCCCGCCTTTTCTCCAAAGGACTGTCTTTCTGGTTGTCGCAGAGGCTCGCTCAGAGACTGGACGCATGGCTTCCTCAGACAGCAGCGAAGCCAGACAGGAAGCGTCTTCCGAAACCATCACATAAAGCTGCCAGCGAAAAGACGTTAAAGAAAAggatgaaaaagagaaagaaaagaagggaaaattTCAAATGTCAACATGCAGGGCCGGACAAAAATGTAGAATGTAATCCGGTCACACAGAAACCGCTACTAGCGTAATTTATGCTTTTAGAGCTACACATTTCGAGTGGACAAAATGGACAAGGTGGGGGGTGGTGGGGGGTGAAGGTGGGAGGTGGTTGGGTTGGAATGGGGGGATCAATTTTACATTGACTGAATGACATCCTTAACTCCTTACCATTACCAGAGTGCTCGTTTTCATTAATGCTGTATACCTCAAATGGTTCAAGTTGTTTCTGGCCCCAACCCGTCCTTATCAAGCATTTCTCCAGTTCCATTAAAATTATGTAGAATCTGAAAAAACGGTAAAGTATTGAGTACTGTTGtactgaaatgtttaactgtgTATAGGCGCAACTTTCTCATGTTGTAACCTATGACCTCAGCTCTTGGTAGTGTCATTTGACCACATGCTCAAAAATGATCACGCATACACCATGAATGCATCTTCATTTATGAGTAGTGATATTTTTACAGTATTATTTGTACGTTTTCTCAAAACTGCAGGCAGTGGAAAATCAGCAGGAAGGGTTCTGTGCTAGTAAAATAGAAAGAGGCTGTAGAAGACCATTGAGCATGGCCCTCAGCCCTTAACTGCTGTGCTATGTGTGtagattatatttttaatataatataataaagaataTTAAGTAATAA

Function


NR:

description
PREDICTED: interleukin-17 receptor E-like isoform X1

GO: NA

KEGG:

id description
K05168 IL17RE; interleukin 17 receptor E

RNA


RNA id representative length rna type GC content exon number start site end site
TU161219 False 533 lncRNA 0.36 1 21797276 21797808
TU161220 False 414 lncRNA 0.38 1 21797276 21797689
XM_034306992.1 True 3195 mRNA 0.47 17 21781224 21797769
XM_034306993.1 False 3193 mRNA 0.47 17 21781223 21797769

Neighbor


gene id symbol gene type direction distance location
brpf1 brpf1 coding upstream 14833 21743942 ~ 21766390 (+)
LOC113533227 LOC108265865,LOC105024957 coding upstream 38662 21694034 ~ 21742561 (+)
trnaa-ugc_5 NA coding upstream 90731 21690421 ~ 21690492 (+)
trnaa-ugc_4 NA coding upstream 91127 21690025 ~ 21690096 (+)
trnat-cgu_3 NA coding upstream 91485 21689667 ~ 21689738 (+)
wu:fl23c11 LOC108265627 coding downstream 10213 21808021 ~ 21824844 (+)
ift122 ift122 coding downstream 62500 21860308 ~ 21903238 (+)
LOC113533243 rho,LOC107698434,LOC107747750,LOC107758318 coding downstream 106078 21903886 ~ 21908552 (+)
trh trh coding downstream 302658 22100466 ~ 22103356 (+)
b3galt4 b3galt4 coding downstream 347281 22145089 ~ 22148333 (+)
G136466 NA non-coding upstream 87521 21674858 ~ 21693702 (+)
G136433 NA non-coding upstream 419343 21360839 ~ 21361880 (+)
G136429 NA non-coding upstream 434062 21346845 ~ 21347161 (+)
G136056 NA non-coding upstream 815755 20947304 ~ 20965468 (+)
G136057 NA non-coding upstream 842153 20937123 ~ 20939070 (+)
G136532 NA non-coding downstream 27181 21824989 ~ 21825322 (+)
G136544 NA non-coding downstream 41824 21839632 ~ 21839852 (+)
G137017 NA non-coding downstream 350815 22148623 ~ 22149777 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding downstream 506921 22304729 ~ 22307615 (+)
G137086 espn non-coding downstream 668959 22466767 ~ 22467029 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 1033367 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 1339032 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 1595605 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 1878856 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 2278580 19487487 ~ 19502643 (+)
LOC113533434 creld1 other downstream 27874 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 294787 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 709818 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 796726 22594534 ~ 22636989 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other downstream 1450540 23248348 ~ 23261991 (+)

Expression



Co-expression Network