LOC113533434 (creld1)


Basic Information

Item Value
gene id LOC113533434
gene name creld1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21825682 ~ 21859668 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU161242
TGGGAAATTTAACGTTCAGACTATGCTATGATTTTGTACTACGCTCTTTTATATGCACAGTACAATTTCTCTGCTGCTCTGCTATAAGAGACTTTACATAGAGAAGTTTTTACTACACTTGATCCGGATTAAGATTTTAGAAAGGGACTTCACTAAAGCTTGGCATGTAATagaatatatttactgtatgtgtgtctcaGAAGAAAGGACAGCCGTATAACATAACGCTGAATCTTTCTCCCGTTTTAGTTTTGGCCTCAAATACTTTAAGCAGCCTGCTACTTTGACACTTTATGTTTGCTCAGTTTAGATTATGGATGgaatgatatgaaaaaaaagacagatttttAATCTATGATTATATTTAAGCATCATGGGCAAACCTGTGAACTATCGTTATAAACCGTCCGTTTGAAATTGGCATTGAAATTGAAAAATCCTAGTTATTTCAGAGTTTCTTGCCATGATGTATTGTTATACCTGTATATCATCTCACCCCTAATTTAGACAAAGCAAAAAATTGAGCAGAAATGTTCTTTAGAGGAAGATAAGACAGAGGGtatgtatga
>XM_034306734.1
GCGGTACTATTATGATACAGCTGCAGCGCTCACAGAATGAGCTAGAAATCCAGATGGGGCGAGGTTAGCATTGGCAAAGAAAAGCAGGTTTATGTCACGCAGGATAATCTGCATTCGAGAATCTGCGGGCAGTTTTagtttgcgtgtgtgtgagagacgaGAGGAAGCGAAAGCCTCTTCTTTGCTCGTAAGAAAAACTGCAACgaCGTCATGTACTCCTCGTCGCCTCTGTTCCTCATCCTGGTGTTTACCTTTGACCTCTCCATGCTGACCGTGCAGGCTGGACCCTGCCAGAGCTGCCGCAAactcacagaaaatttcatcaagGGCCTGGAGCGAACAGCCAATAAAAACTTTGGTGGTGGGAACACGGCTTGGGAAGAGGAGAAGCTGGCAAAATACGCTCACAGcgAAACCCGCCTGCTGGAGATCGTAGAGACAGCATGTGAGAAAACCGACTTTGAATGTAACAAACTGCTGGAACAGATAGAGGACCAGGTCGAGACATGGTGGTTCCACAGACAACAGGAAGCACCTGACTTGTTCGAGTGGTTGTGTATTGAAGAGCTCCGACTTTGCTGCCCAGCAGGTCACTTCGGACCAGAATGTGCTGAATGCCCGTCAGGTCCCGGCGGTGTGTGTGGAGGTCTCGGGCGCTGTGAGGGAGAGGGAACGCGTCTGGGAgatggggagtgtgtgtgtgaccctgGCTATTCGGGCCCTCTGTGTCAGGACTGTGCAGACGGATATTACAGAGAGAAGAGCTCCAATCACTCGCAGCCGCCCTGCTCAGcCTGCTATCACTCCTGTAAAAAGTGTAGTGGTCCACAAGACTACAAGTGTCTGGACTGCAAGCCCGGATGGATCCTTCATGACAACAAGTGTGTGGATGTGGATGAGTGCGGCACTGAGTTGGCTCGCTGCTCGTCTAACACTTACTGTTTCAACACTGATGGCTCGTACGAATGCAGAGGTTGTGATCCGGCGTGTGTAGGATGCATGGGCAGTGGTCCTGCTCGCTGTAAGAAATGCGCTCGAGGTTACAGACTGACCGGAGCTAAGTGTCTCGatgtggaTGAGTGTAAGGAGAAAGCAATAGCGTGTCCGGGACTGAATGAAGCTTGTATTAATGAACAGGGTTCGTTCCGATGTGAGTGCGCAGAGGGCTTCATACGCAGAGACAGCATCTGTGTGGAGAACCTGCCACCTTCTGATCCAGATAAAGGCTTATTTGACGACATGACGGATGACGAGGTGCTCGTCCTTCAGCAGATGTTTTTCGGAGTGGTGATCTGCGCGCTAGCCACGCTAGCCGCTAAAGGAGACATGGTCTTCACTGCCATCTTTATTGGGGGCGTGGCTGCCATGGCTGGCTACTGGCTCTCGGAGAAAGGCGACCGCATGCTGGACGGTATCCTCAAAGGAcgctaaccaatcagaatctcaGGAACTAGAAAGCGAGGACAGATCGGTGAATGGTACACAAGCCTATTAGGCGACCTAAACTTGAAGAAGTGGGAGGGGCTGGGAGGTGGGACAGCGAGGAGTCAGGGGAGAGAAGGGGGATTATAGCAATGTTGCTGCGTCAAGGGCTGGGAAATTTAACGTTCAGACTATGCTATGATTTTGTACTACGCTCTTTTATATGCACAGTACAATTTCTCTGCTGCTCTGCTATAAGAGACTTTACATAGAGAAGTTTTTACTACACTTGATCCGGATTAAGATTTTAGAAAGGGACTTCACTAAAGCTTGGCATGTAATagaatatatttactgtatgtgtgtctcaGAAGAAAGGACAGCCGTATAACATAACGCTGAATCTTTCTCCCGTTTTAGTTTTGGCCTCAAATACTTTAAGCAGCCTGCTACTTTGACACTTTATGTTTGCTCAGTTTAGATTATGGATGgaatgatatgaaaaaaaagacagatttttAATCTATGATTATATTTAAGCATCATGGGCAAACCTGTGAACTATCGTTATAAACCGTCCGTTTGAAATTGGCATTGAAATTGAAAAATCCTAGTTATTTCAGAGTTTCTTGCCATGATGTATTGTTATACCTGTATATCATCTCACCCCTAATTTAGACAAAGCAAAAAATTGAGCAGAAATGTTCTTTAGAGGAAGATAAGACAGAGTAtgtatgaagttttttttttttttttttttcccccactccATCCTACACACATTTTATGAAATGCATGAACACTTGACCTAGGAAGgatatttatactgtgtgttCTCAAACATCTTTAACTTACATAATTTTTCTTTGaataatttcactttttttttccatttattgaGCAGTAAGAGTAAGGactataaatgttatttatttaattatttattaattacagcTCCTTATAGGTGTATTTTTTCCTgatataattatgtatttatacaaGAGGTTATTAGATTGTcttcatttgttgttttttcttccatttaaatgtctttatttgaatttgtaagTAGAGCATCATTTTGTGATGTCTATATGGCAGATGTGTgttatgatgtttttttaaattttatttatttattttttataatttcagGGGCTTTCGAATTCAAAATCCATGAGCCTTGCTCATTAAATATTAGACCTACACGTCTGTGAAATTGGCACCCGTTTAAAAAGAACATGAATAATACTTCAAGGTAATTCATTTGTGCTTctttgatagtttttttttttttttttttgagatattttagcacatatatttaaatatatgtacCATCATGGCTGAGAGTGATATCACAGTGCATTAATTTACAGTGAACTCTAAACCACACCAAAAAACAACTAACCAAATGAGTATCGatcatttgtttgtatttgtgctATACCATTTGTTTTGGACTATTTTTAGGTATTCACTGTGAACTCCAACAaaatatagctgctataatatctCAAATAAACAGACTAACAATCATTTTATTGCACAGATCAGCAAAAATGATCTGCTCATATAAAAGCTAGctaaactggaaaaaaacaaattacattatatatgtgaaattgaatttaaaacatttataaagataaataatgcTTTCTCCATGTGGAACCTCCAGGATCTGATTTCAGTATGACATATGATGCATGAGCTCCTTTTAataagaaactttttttttttctctttcttttttaaattaaaactgtcAGTTGTCTTGAATTGAAAAAGCTAGTCCACCTATGAACTCCATAGTCTACCTCCATGTTTCAGATTTTAGGCTTTTGCTGTAGTAATGCCACAGAAATAATCATTAGTTTTAATGATTTGATTTATTCTATGCCAAAACCGTGGATCATTTCATTAAAGCCTTTTCAAGTCAC

Function

symbol description
creld1 Predicted to enable calcium ion binding activity and protein disulfide isomerase activity. Predicted to be an extracellular matrix structural constituent. Predicted to be involved in cardiac septum development and endocardial cushion development. Part of collagen-containing extracellular matrix. Implicated in atrioventricular septal defect and heart septal defect.

NR:

description
PREDICTED: cysteine-rich with EGF-like domain protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24335 CRELD; protein disulfide-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
TU161242 False 569 lncRNA 0.34 2 21843187 21859668
XM_034306734.1 True 3365 mRNA 0.41 11 21825682 21844958

Neighbor

gene id symbol gene type direction distance location
wu:fl23c11 LOC108265627 coding upstream 838 21808021 ~ 21824844 (+)
brpf1 brpf1 coding upstream 59292 21743942 ~ 21766390 (+)
LOC113533227 LOC108265865,LOC105024957 coding upstream 83121 21694034 ~ 21742561 (+)
trnaa-ugc_5 NA coding upstream 135190 21690421 ~ 21690492 (+)
trnaa-ugc_4 NA coding upstream 135586 21690025 ~ 21690096 (+)
ift122 ift122 coding downstream 640 21860308 ~ 21903238 (+)
LOC113533243 rho,LOC107698434,LOC107747750,LOC107758318 coding downstream 44218 21903886 ~ 21908552 (+)
trh trh coding downstream 240798 22100466 ~ 22103356 (+)
b3galt4 b3galt4 coding downstream 285421 22145089 ~ 22148333 (+)
LOC113533433 st1s3,LOC108432118,LOC108265623 coding downstream 304310 22163978 ~ 22170747 (+)
G136532 NA non-coding upstream 360 21824989 ~ 21825322 (+)
G136466 NA non-coding upstream 131980 21674858 ~ 21693702 (+)
G136433 NA non-coding upstream 463802 21360839 ~ 21361880 (+)
G136429 NA non-coding upstream 478521 21346845 ~ 21347161 (+)
G136056 NA non-coding upstream 860214 20947304 ~ 20965468 (+)
G137017 NA non-coding downstream 288955 22148623 ~ 22149777 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding downstream 445061 22304729 ~ 22307615 (+)
G137086 espn non-coding downstream 607099 22466767 ~ 22467029 (+)
G137087 NA non-coding downstream 608966 22468634 ~ 22468839 (+)
G137088 NA non-coding downstream 611373 22471041 ~ 22471330 (+)
LOC113533123 LOC108265628 other upstream 27874 21781223 ~ 21797808 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 1077826 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 1383491 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 1640064 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 1923315 19825798 ~ 19902367 (+)
LOC113533283 rbsn other downstream 232927 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 647958 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 734866 22594534 ~ 22636989 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other downstream 1388680 23248348 ~ 23261991 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 1654918 23514586 ~ 23524705 (+)

Expression


Co-expression Network