LOC113533405


Basic Information

Item Value
gene id LOC113533405
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22507626 ~ 22509494 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU162067
CACGTTTGATGTGTTATACAGTCTCATTTTTGAGAGacgtgttatttatttatttattgtttacttgTAAACACGTTTGATGTGTTATACAGTCTCATTTTTAGAGacgtgttatttatttattgtttacttgTAAACACGTTTGATGTGTTATACAGTCTCATTTTTAGAGacgtgttatttatttattgtttacttgTAAACACGTTTGATGTGTTATACAGTCTCATTTTTAGAGacgtgttatttatttatttattgtttacttgTAAACACGTTTGGTG
>XM_026925544.2
GAAGACTACATCTCTGCAGGAATCAAGAATGACTCCAGCTGTGTCTTTCCCGCCCCGCGGTGCCAGCACGGTGGCCATGAGAAAAGAGGCCTCGGAGCTGCGAAAAACCTTAAAACCTCTGATGGAGAAGCGCAGACGAGCGCGCATTAATGACTGCCTCAGCCAGCTGAAAAACCTCATCCTTCCTCTGATGGGAAAAGATaaCTGTCGCTACTCGAAGCTCGAGAAAGCAGACATCCTGGAAATGACGGTCAAATTCCTCACTGATGTCCCTCAGACTCCGATAAATGATGCTGCAGACAGTTACAGAGAGGGCTATGAAGCGTGCCTGCAGCGGGTCTCCGCGCTCCTCCCGCGCACGAGCCTCGACCGTGAAACCTGCGCGCGCGTGCACGACTTCGTCCAGCAGTCGCTGCGCTCGAGCTCGCCGGCCTGCCGCACGTGCAGCGCTCGCACCTCCAGCGCGCTCTCACCGATCCAGCACGAGCGGCTTCTGAGCCGGAAATGGATCGACATCACTCGGAGAGAAAAGCGCGCGAGCGTCACTGCGGAGAGAGCTCAGGATGCGCCACAGGTCGCCGCTCAGCCCGTGTGGAGACCGTGGTAGCTGCAGAGAAGCGGCACGCGCTTCATGctacttgttaaataatgtacataaaCAGCCTAGAGATGAGTTGTAAATACTTGCAGCTATGTATAGCGTGCTGACTTGAGGTACTAAGTCAAGTCGATTTTTACTTAAGTATTGTATACTTGTTCGCTTTGTCAAAATTCGCTCGTTTGTATCTATCGGTTCGTTTTCTTAGAGATCCTGCGCGGAAGCTGTAAATAACGCGCGCGTGCGGTTTGGGGTTGAGGGTGAGGGCTTGTAGAAAACGCCTATGTAAGACCCTGGGGGTTGTCCAGTGTAAGACATGTGCTCTTCCACTTCAGTATTCTGAGTTTGTGCAGATTATTTCACTCGTAAGCACattatgttgtgttttaaaGTCTCATTTCTGAGAGATGTGCTGTTTATTCTCtttgtttactttgtttatttctttgtttacaGTCTCATTTTTAGAGacgtgttatttattatttttgtttacttgtAAACACGTTTGATGTGTTATACAGTCTCATTTCTGAGacgtgttatttattattttctttgtttacttGTAAACACGTTTGATGTGTTATAGTCTCATTTTTGAGAGacgtgttatttatttattgtttacttgTACACACGTTTGATGTGTTATAGTCTCATTTCTGAGAGacgtgttatttattattttctttgtttacttGTAAACACGTTTGATGTGTTATAGTCTCATTTTTGAGAGAcgtgtaatttatttattgtttacttgTAAACACGTTTGATGTGTTATACAGTCTCATTTTTGAGAGacgtgttatttatttatttattgtttacttgTAAACACGTTTGATGTGTTATACAGTCTCATTTTTAGAGacgtgttatttatttattgtttacttgTAAACACGTTTGATGTGTTATACAGTCTCATTTTTAGAGacgtgttatttatttattgtttacttg

Function

GO: NA

KEGG:

id description
K09087 HES2_6_7; hairy and enhancer of split 2/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
TU162067 False 284 lncRNA 0.28 1 22509211 22509494
XM_026925544.2 True 1570 mRNA 0.44 3 22507626 22509409

Neighbor

gene id symbol gene type direction distance location
hes2.1 NA coding upstream 8414 22497758 ~ 22499212 (+)
ybx1 ybx1,LOC106572208,LOC107595774,LOC107693424 coding upstream 91051 22411193 ~ 22416575 (+)
ppih ppih coding upstream 97822 22377928 ~ 22409804 (+)
exosc10 exosc10,LOC107682930 coding upstream 131161 22360790 ~ 22376465 (+)
mtor mtor,LOC107564227,LOC107727986,LOC107594963 coding upstream 148578 22267058 ~ 22359048 (+)
acot7 acot7,LOC107754737,LOC107693425 coding downstream 2578 22512072 ~ 22583841 (+)
kank3 kank3 coding downstream 176008 22685502 ~ 22706507 (+)
pex10 pex10 coding downstream 352832 22862326 ~ 22867020 (+)
clcn6 clcn6 coding downstream 389510 22899004 ~ 22915980 (+)
plod1a plod1,plod1a,LOC107748983,LOC107698842 coding downstream 454008 22963502 ~ 22977089 (+)
G137088 NA non-coding upstream 36296 22471041 ~ 22471330 (+)
G137087 NA non-coding upstream 38787 22468634 ~ 22468839 (+)
G137086 espn non-coding upstream 40597 22466767 ~ 22467029 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding upstream 200011 22304729 ~ 22307615 (+)
G137017 NA non-coding upstream 357849 22148623 ~ 22149777 (+)
G137229 NA non-coding downstream 1411 22510905 ~ 22511176 (+)
G137232 NA non-coding downstream 82739 22592233 ~ 22593268 (+)
G137371 NA non-coding downstream 172371 22681865 ~ 22684031 (+)
G137401 si:ch211-251b21.1,LOC108265050,LOC108432140,LOC107691059,LOC107602462,LOC107755276,LOC107748962 non-coding downstream 215668 22725162 ~ 22730142 (+)
G137486 NA non-coding downstream 407770 22917264 ~ 22919033 (+)
LOC113533283 rbsn other upstream 383875 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 647958 21825682 ~ 21859668 (+)
LOC113533123 LOC108265628 other upstream 709818 21781223 ~ 21797808 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 1759770 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 2065435 20222415 ~ 20442191 (+)
LOC113533432 gpr153,LOC107693426 other downstream 85040 22594534 ~ 22636989 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other downstream 738854 23248348 ~ 23261991 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 1005092 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 1240923 23750417 ~ 23757114 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 1380922 23890416 ~ 23894725 (+)

Expression


Co-expression Network