fkbp1aa (fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744)


Basic Information

Item Value
gene id fkbp1aa
gene name fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24011582 ~ 24013781 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU163200
AGCTCGAGTCTTTATCACAGAGCGCATTTTGTGCCCAGAGTCGAGACCAATAAACACCGCGCCAGGATGGGAGTCGAGGTCGAGACGATAACACCCGGAGACGgaagcACTTTCCCCAAGAAAGGACAGACATGCGTTGTGCACTATGTTGGATCTCTGACGAACGGCCGCACGTTTGACTCCTCTCGGGACCGAGGCAAGCCCTTCAAATTCAAGATCGGCAAGCAGGAAGTTATCCGCGGCTGGGATGAAGGAGTGGCTCAGATGAGTGTAGGCCAGCGTGCGAAGCTGACTTGCACCCCTGACTTTGCCTACGGGAGCAAAGGCCACCCTGGCATCATCCCTCCCAACGCCACCCTCATATTCGACGTGGAGCTTCTGAGCTTGGAGTAACAGCGCTGCAGTTCTTCTCAGGTTTTTCCCTATTCGTATTTTCAGGGTCAACCTTTTTTGGGGAACATGGCCTCCTGCACGTGATCCTTGAAAGGGGCTAGTGTTGTTAGCTACACCACTTAGCTTAGCTCTGTCATccatttgtatattttgttacctttttattcctttcctgCTGAACATGTTCATCAATATGCTCTCACCCACTGGATGCTCACTATAAACCTCccactttttccttttcttttgtcttttttttttttttttttttttgtatttgatttCTGTAAACACGTTCACTTCAACAGGGCTTTGGCTGAGCTGGTAGTCTGTACTCTGGTGGGGAAATTT
>TU163201
AGCTCGAGTCTTTATCACAGAGCGCATTTTGTGCCCAGAGTCGAGACCAATAAACACCGCGCCAGGATGGGAGTCGAGGTCGAGACGATAACACCCGGAGACGgaagcACTTTCCCCAAGAAAGGACAGACATGCGTTGTGCACTATGTTGGATCTCTGACGAACGGCCGCACGTTTGACTCCTCTCGGGACCGAGGCAAGCCCTTCAAATTCAAGATCGGCAAGCAGGAAGTTATCCGCGGCTGGGATGAAGGAGTGGCTCAGATGAGTGTAGGCCAGCGTGCGAAGCTGACTTGCACCCCTGACTTTGCCTACGGGAGCAAAGGCCACCCTGGCATCATCCCTCCCAACGCCACCCTCATATTCGACGTGGAGCTTCTGAGCTTGGAGTAACAGCGCTGCAGTTCTTCTCAGGTCAACCTTTTTTGGGGAACATGGCCTCCTGCACGTGATCCTTGAAAGGGGCTAGTGTTGTTAGCTACACCACTTAGCTTAGCTCTGTCATccatttgtatattttgttacctttttattcctttcctgCTGAACATGTTCATCAATATGCTCTCACCCACTGGATGCTCACTATAAACCTCccactttttccttttcttttgtcttttttttttttttttttttttgtatttgatttCTGTAAACACGTTCACTTCAACAGGGCTTTGGCTGAGCTGGTAGTCTGTACTCTGGTGGGGAAATTT
>XM_026925446.2
GCGGTAGAGGGCTGTAAGTGAGAGGGGACCTTTATAGCTCGAGTCTTTATCACAGAGCGCATTTTGTGCCCAGAGTCGAGACCAATAAACACCGCGCCAGGATGGGAGTCGAGGTCGAGACGATAACACCCGGAGACGgaagcACTTTCCCCAAGAAAGGACAGACATGCGTTGTGCACTATGTTGGATCTCTGACGAACGGCCGCACGTTTGACTCCTCTCGGGACCGAGGCAAGCCCTTCAAATTCAAGATCGGCAAGCAGGAAGTTATCCGCGGCTGGGATGAAGGAGTGGCTCAGATGAGTGTAGGCCAGCGTGCGAAGCTGACTTGCACCCCTGACTTTGCCTACGGGAGCAAAGGCCACCCTGGCATCATCCCTCCCAACGCCACCCTCATATTCGACGTGGAGCTTCTGAGCTTGGAGTAACAGCGCTGCAGTTCTTCTCAGGTTTTTCCCTATTCGTATTTTCAGGGTCAACCTTTTTTGGGGAACATGGCCTCCTGCACGTGATCCTTGAAAGGGGCTAGTGTTGTTAGCTACACCACTTAGCTTAGCTCTGTCATccatttgtatattttgttacctttttattcctttcctgCTGAACATGTTCATCAATATGCTCTCACCCACTGGATGCTCACTATAAACCTCccactttttccttttcttttgtcttttttttttttttttttttttgtatttgatttCTGTAAACACGTTCACTTCAACAGGGCTTTGGCTGAGCTGGTAGTCTGTACTCTGGTGGGGAAATTTGGCTAATTATGAAATGTTAAAGTACttgaaaataaacattgtttATAAAAAGACA
>XM_026925447.2
GCGGTAGAGGGCTGTAAGTGAGAGGGGACCTTTATAGCTCGAGTCTTTATCACAGAGCGCATTTTGTGCCCAGAGTCGAGACCAATAAACACCGCGCCAGGATGGGAGTCGAGGTCGAGACGATAACACCCGGAGACGgaagcACTTTCCCCAAGAAAGGACAGACATGCGTTGTGCACTATGTTGGATCTCTGACGAACGGCCGCACGTTTGACTCCTCTCGGGACCGAGGCAAGCCCTTCAAATTCAAGATCGGCAAGCAGGAAGTTATCCGCGGCTGGGATGAAGGAGTGGCTCAGATGAGTGTAGGCCAGCGTGCGAAGCTGACTTGCACCCCTGACTTTGCCTACGGGAGCAAAGGCCACCCTGGCATCATCCCTCCCAACGCCACCCTCATATTCGACGTGGAGCTTCTGAGCTTGGAGTAACAGCGCTGCAGTTCTTCTCAGGTCAACCTTTTTTGGGGAACATGGCCTCCTGCACGTGATCCTTGAAAGGGGCTAGTGTTGTTAGCTACACCACTTAGCTTAGCTCTGTCATccatttgtatattttgttacctttttattcctttcctgCTGAACATGTTCATCAATATGCTCTCACCCACTGGATGCTCACTATAAACCTCccactttttccttttcttttgtcttttttttttttttttttttttgtatttgatttCTGTAAACACGTTCACTTCAACAGGGCTTTGGCTGAGCTGGTAGTCTGTACTCTGGTGGGGAAATTTGGCTAATTATGAAATGTTAAAGTACttgaaaataaacattgtttATAAAAAGACA

Function

symbol description
fkbp1aa Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Graves' disease. Orthologous to human FKBP1A (FKBP prolyl isomerase 1A) and FKBP1B (FKBP prolyl isomerase 1B).
fkbp1ab Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; optic vesicle; and retina. Orthologous to human FKBP1A (FKBP prolyl isomerase 1A).
fkbp1a Enables several functions, including FK506 binding activity; activin binding activity; and peptidyl-prolyl cis-trans isomerase activity. Involved in several processes, including SMAD protein complex assembly; regulation of protein metabolic process; and regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Located in Z disc; cytosol; and membrane.

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP1A

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09568 FKBP1; FK506-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU163200 False 744 TUCP 0.48 5 24011617 24013726
TU163201 False 719 TUCP 0.49 5 24011617 24013726
XM_026925446.2 True 834 mRNA 0.47 5 24011582 24013781
XM_026925447.2 False 809 mRNA 0.47 5 24011582 24013781

Neighbor

gene id symbol gene type direction distance location
mfsd2al2 LOC108266014 coding upstream 1508 23997054 ~ 24010074 (+)
fam110a LOC108266013 coding upstream 14765 23990807 ~ 23996817 (+)
prickle3 prickle3 coding upstream 22392 23956508 ~ 23989190 (+)
plp2 plp2,LOC108426740,LOC107682436 coding upstream 60332 23935124 ~ 23951250 (+)
sypb syp,sypb,LOC108426646,LOC107678440,LOC107553146,LOC107664463 coding upstream 80066 23920277 ~ 23931516 (+)
rasef rasef coding downstream 24049 24037830 ~ 24057197 (+)
rmi1 rmi1 coding downstream 113400 24127181 ~ 24130504 (+)
ntrk2a ntrk2,LOC107752549,LOC107678451,LOC107757434 coding downstream 124360 24138141 ~ 24189458 (+)
naa35 naa35,LOC107752550,LOC107757435 coding downstream 215064 24228845 ~ 24240928 (+)
zgc:154046 zgc:154046,crat,LOC108265337,LOC108426726,LOC107722731,LOC107702859 coding downstream 250278 24264059 ~ 24277565 (+)
G138176 NA non-coding upstream 21485 23989898 ~ 23990097 (+)
G138014 NA non-coding upstream 261214 23747463 ~ 23750368 (+)
G137650 NA non-coding upstream 852075 23095798 ~ 23159507 (+)
G137651 NA non-coding upstream 907916 23100607 ~ 23103666 (+)
LOC113533633 NA non-coding upstream 1005186 23002703 ~ 23006396 (+)
G138239 NA non-coding downstream 107829 24121610 ~ 24124569 (+)
G138280 NA non-coding downstream 349168 24362949 ~ 24363761 (+)
G138535 NA non-coding downstream 488305 24502086 ~ 24502371 (+)
G138578 NA non-coding downstream 632998 24646779 ~ 24647451 (+)
LOC113533328 LOC108265709 non-coding downstream 717206 24730987 ~ 24783425 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 116857 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 254468 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 486877 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 749591 23248348 ~ 23261991 (+)
LOC113533432 gpr153,LOC107693426 other upstream 1374593 22594534 ~ 22636989 (+)
LOC113533115 gnrh1 other downstream 1118960 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 1538113 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 1895794 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 2386410 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 2549039 26562820 ~ 26567932 (+)

Expression


Co-expression Network