G138961


Basic Information

Item Value
gene id G138961
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25448615 ~ 25451577 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU164115
TTActgagtttattgctttattctgccccctagtggactaACAGAGATTATCTTTTCCCCCAACTATTTCAGTTCAATTACAGTCCACAAGACAATTTTAGATCCATATGTTTGACACCACTGCTGTATGATCAAATTATGGCATGAACTCTGTTGTCTAGTGTTGCATTTGACTAAAACTTGTAACACAGAATTTCTGAccgaaaaaacaaagaaaatgcccctcaactcagaattcctactcgcAACTCCAaatggtctcctcaaccctgagttcagcaagtaaCGTCAAATCAACATAGCTTCTCAGAGAATGAACAGTAAACAATGTAgtacttcttacctttaaatgagttacactgtgtatatacaagtatttgctttaaatcAACCTACATAGATAttagattattaaatatttaacattggCTATACAGAACATTGTTTTGAGGAGGAACATAAACATGACTCATCACAGTTAGATGGCTTGTTAacaaaaagatgaacatgaaggtatctgtggatttttttctaactttttGGTAGCTCGATTGCACGGAGGTCGAAAATGATGTAGTTCCAAGGTACGTCAAATGTAGCATTAAACTAAACAGCAGCCTAGATGGAGAAACTCATCTATGGAGAACCCCCAACCTCAAGTGGTTCAGAGTACCTTTACAGGTTTTGTACACTACGGATGGCTGTCACAGTTCCAGGTTTATAGAATACTAATGGATACACAGGATAGCTGCCCTCAAAACCACCCTACTTCGGGATTGTTAGAACCCCAAAAAGACAGACTTGTACTCAACCTTTGACCTTCCAAAGTACGGTTTTATAGAAATCGAGGTGTAGAGCAAAGACTGTAACATATAATTTGTCAAAGAAAGTGCTTAGGCATGTGTGAGTATACAAGTGGACTTCATTATCCATCATATTTATGTCTACATTTCATTGGATGTCCATCCATGATGGAGAATCCACAAAAAACCCTTTCTTTCAAAATAcagtttgttacatttatttatttgaaatcgATAAACTTGAGTGAAGTACCAGCTATGCTATTACATAAACATTTGGTTCCATGGCATTTCATTCAGATATGCTTGTCTCCTTTCTGAATATATCCTGTAATATAGGTGGTAAAAGAGGCACCTTCTAGCAAGGTAGATTGTTTTAATCACTAATACATCGtctgtatataaaaaagaaagtgttaGAGTTGTTCGTTTGGTTAGGGCTCTGTGATTATAACAGCAACTAACTGTTTTATTATGATTGATATTGTGCTAGTGATGTCTTAATGTGCTAAACAAAGATTTCAGTCACTGTATAGGAATAAGTGTAATTCCACAGACTTCTCAAAAAGGTAGTTTATgagaaatactgaaaataagTGCACAGTTGGTCTTTATTGACCATAATTCTATATATGATTAATTCTGAAGGTCACATAGTTACATCTTGGAATCTCTGAGAAtattacagattaaaaataCAGACTGAAACTGTACATAATTAAGCATCACAGTGTATATAAGTACATACGTTCATAAATctcagaagattttttttttttttttttttcaaatttgtcaACAGTCCATCAGATACCTTGCTGCTGTCCAGTGGAAACTTTgtaatttccttttttgtttttttttaaagagagagatttaaattaattttgtctTACAGCTTTTCAGGATTCTTTGAAGACCTTTCTAAGCACCTAGTATTGAGAAGATGATGCTTGCTGTTTAGGTACTAACAAAACTAAATGCAacaattgtaaaatgtttttgttggaCAGCAACGCTTTAGACCAGGTAAACACATTTAGGAATTTCTCAGTAAGTCAGCTGTATCCATATCTGCTGCTGCAGTCGAGACACCCCATGCCTTAATGTAAATGATTCTCTTTTACAGTAAAGGGTTCTTTTCACTCTATACTGTACGTGTTTGTACTGAAACATGGTGAAACTTTGTAAGTACCAAACATGCTGCACACTGTATATCTATTCATCATGTACTAGCATCCATACTACCATACCTTTGGGACATAGTGTGTGATTTTGATTGCTTTATTAgccagctttattttttttaaaaaaggctcTTTAGAGAAAATGTCTTTGTGATCGAAAGGTACCATTGTTAATAGCCTTTAAGGCCTTAGAAATTAGTAAATGCAGTTTGCTGCTTCAACCACCCCCATGACAGCCCACGGCCGGTAAAATCAATGCAGGGAATTCCACTTCTAATTTGTCTTTCATTattactgactcactgaaatgCTATTTAACACTCCGTAGATGCTGCATATAAATAGTTGAGCAGGTAACGGGAGTGCGTTAAGACTAGAAACCTATTATGTGCATGTAATAGACTTCTTGAATGAATGTTCAGCATCTAACACTGCTTTAgatttgaataaatatatactagCAGACAGCTGAGCACTATGCAGTATAATATAGGCTACTGTACGCTATGTACTGCACTTCAATGCAGTTTTAGACACTAAGGCACGCTCTGACTACGACTATCTATTATATTAACACTAGAATGTGTAAAAAGAGCAAAATCCTGAAATGTTTCCCATGTTCTCGGTGCTAACATACCACCGCTGCAAAGAAGCACAAACCAAAGGGAGAACAAGCACCCCCAAGAGATGTGTTTTTGCTGCACAATCACAGCTAGTCACTCTGTCAAGGAGTCACCGATGTTAAATAGTTGAATACAAAACTTGAATGTTTTCTCAGTATTACCAAGATGAtgctgacattttttatttgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164115 True 2802 lncRNA 0.36 2 25448615 25451577

Neighbor

gene id symbol gene type direction distance location
LOC113533297 rhobtb2 coding upstream 1741 25435201 ~ 25446874 (+)
slc25a37 slc25a37,LOC107559458,LOC107710846,LOC107747712 coding upstream 157040 25276381 ~ 25291575 (+)
trnae-cuc_21 NA coding upstream 176935 25271609 ~ 25271680 (+)
entpd4 entpd4,LOC107710847,LOC107747713,LOC107698120 coding upstream 179166 25257998 ~ 25269449 (+)
chmp7 chmp7,LOC107710849,LOC107698119,LOC107559457,LOC107678414 coding upstream 192232 25249745 ~ 25256383 (+)
LOC113533497 pebp4 coding downstream 2062 25453639 ~ 25543588 (+)
bin3 bin3,LOC107665194,LOC107678406,LOC107710841 coding downstream 112244 25563821 ~ 25606864 (+)
b2ml b2m coding downstream 211217 25662794 ~ 25665298 (+)
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding downstream 215348 25666925 ~ 25671900 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding downstream 234628 25686205 ~ 25703125 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 20427 25421054 ~ 25428188 (+)
LOC113533374 NA non-coding upstream 115002 25309905 ~ 25333613 (+)
G138907 NA non-coding upstream 163667 25277297 ~ 25284948 (+)
LOC113533216 NA non-coding upstream 599071 24848068 ~ 24849544 (+)
LOC113533328 LOC108265709 non-coding upstream 665190 24730987 ~ 24783425 (+)
G139166 NA non-coding downstream 220941 25672518 ~ 25683091 (+)
G139172 NA non-coding downstream 358598 25810175 ~ 25815041 (+)
LOC113546140 NA non-coding downstream 497272 25948849 ~ 25950449 (+)
G139235 LOC108265343 non-coding downstream 581017 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 1061315 26512892 ~ 26519482 (+)
LOC113533115 gnrh1 other upstream 314357 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1434834 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1553890 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 1691501 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 1923910 23514586 ~ 23524705 (+)
egr3 egr3 other downstream 100317 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 457998 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 948614 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 1111243 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 1174476 26626053 ~ 26729946 (+)

Expression


Co-expression Network