G139166


Basic Information

Item Value
gene id G139166
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25672518 ~ 25683091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU164343
TTGTAAATGTAATCTTTATTTGTCTATTTGGCTTAGAATATACACTACCAAGTTCCAATGGCACATTTTGCCAAAGACTACTCTTCTTTTTCAATTTCAAACTGTTTAAACCATATTCATCCTggaatataaaacaaattctCTGATATaaggtatgtatatatatatatatatatatatattaatacaagtacaatatgtaaatgtacaaaGATGAAGACATGAAATGAGAAGCAATGAATGAAAAGACTTGGATGCGGGTAAAGTTCTGTGCTTCTGCTTTTCCTCTCTTGTGACTCACTTCCATGTCTGTTTTCCTAAACTAAATGTACCAGATAGCCTGATGGTGACTACGACAAAGTTTAAAGCACTGACTctaaatgtaagtaaatgtgAAATGTCCTAAATGGTGTAAATGAATGTGGTTGTGTACTATGATGTGATTGTGCGTGGCCAGGATTTTGTTAGTTAACACCATTTGCACCACACCTGGTGCATTAAGCAACCTCATGGTCAAGCAAACGTTCTAGTTATGACAGTATATAGTCCTCGATTGCCTTTTATGAATGATCAGTTGTTCATATATTCATGACATGCAAATACAGGCAGGTTGGACGTCTTTATCACTGGTGGACTTTATACAGTAGGGAATGCATGATCAGCATAGAAATACATAAGACACGTGGAATGATGCAGAACCAAAGGCACAatgatttgaaagaaaaacaactgcTTAAGGAAAAGAGGGTGTAGTGACAGTCTTTGACAGAGTAGTGATACTGAGAGATGGAGTTTTTAAAAGGATCGCTATGCTGCAGGAAAGAAGTTGCTCTCTCCCTTTTCCTCTAAGTAGCTTCGTGATGCCATGTGCTGCATGGGACTTGGAAAGAAAGGGACGCTGTCACATGGTATTTCGAACCCTGGAGGTCTTGGAGGAAGAAGAGATGACAATCATGGCAAGGGTgggcttgtttttgtttttttgttttttttttgttgttgttgttcggTCTCTGCTAGATCACGGTCATCTCTTTCCCTccttgccatcagctttttttttttttttagtgaagtCAAAGTTCCTGCTTCCTCATGAAAGTAGAAGTGGTGctacatgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaagagagagacacacttACCCAGAATCACCAAGGATGATCACCTTAAGCAGCACCTTCTTGCGAGAGGCCATGACGTCCAGACCAGATCTCTTCCGCCTCTTCACCTtcgaaacacaaacacagcgtTTAGGTTTGTCCGAAAGAAATTCACTCCCTGAATGTGTGCAAGCAACAAATTTATATCCAGCGTTATCAGTTATGGAGCAACACATCTGCTGCGGAGCCTGGACGCCTTGCTCTAGCCGAACATGGCTGCGGAGTCACAAGGGACTGACGCACCGCTGACCTGCTTCCCAAACCGGAAGTGCCGCCCCtccattttagtttttattcatttattatttcagtatttctaaTCTCCAGAATGACAATACCTCTCTTAAAATACTGCTCGTACTTTTTTCCAAATCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164343 True 1578 lncRNA 0.40 3 25672518 25683091

Neighbor

gene id symbol gene type direction distance location
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding upstream 618 25666925 ~ 25671900 (+)
b2ml b2m coding upstream 7220 25662794 ~ 25665298 (+)
bin3 bin3,LOC107665194,LOC107678406,LOC107710841 coding upstream 65654 25563821 ~ 25606864 (+)
LOC113533497 pebp4 coding upstream 128930 25453639 ~ 25543588 (+)
LOC113533297 rhobtb2 coding upstream 225644 25435201 ~ 25446874 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding downstream 3114 25686205 ~ 25703125 (+)
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding downstream 79874 25762965 ~ 25804442 (+)
LOC113537824 NA coding downstream 234656 25917747 ~ 25919263 (+)
LOC117595683 NA coding downstream 255555 25938646 ~ 25940631 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding downstream 269876 25952967 ~ 25989162 (+)
G138961 NA non-coding upstream 220941 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 244330 25421054 ~ 25428188 (+)
LOC113533374 NA non-coding upstream 338905 25309905 ~ 25333613 (+)
G138907 NA non-coding upstream 387570 25277297 ~ 25284948 (+)
LOC113533216 NA non-coding upstream 822974 24848068 ~ 24849544 (+)
G139172 NA non-coding downstream 127084 25810175 ~ 25815041 (+)
LOC113546140 NA non-coding downstream 265758 25948849 ~ 25950449 (+)
G139235 LOC108265343 non-coding downstream 349503 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 829801 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 1195545 26878636 ~ 26899417 (+)
egr3 egr3 other upstream 113787 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 538260 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1658737 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1777793 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 1915404 23750417 ~ 23757114 (+)
LOC117597866 NA other downstream 226484 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 717100 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 879729 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 942962 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1499930 27183021 ~ 27261741 (+)

Expression


Co-expression Network