G139172


Basic Information

Item Value
gene id G139172
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25810175 ~ 25815041 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU164350
TAAGAAGTCAGTTTTAGGTTTCAATATCAAGAAAATGTAATGAGgcatttaatgaaatgaaaataacacTTTATGAAATAGATGCACTTGTTAATACTATGTGCAAATACATCAGCCATAATCAGctatacaatataaataaattgcatcaTGTGTGTGCAATTACACAAAGCCTTATTTCTCAACAGGTTATTATGGTTTAGTGTACTCTGAATACAACAATcaaacatatttacatacatacatataatgaAAGGCATAAACATATCCCATATTTGATAAGTGATGTTGATCAATTAGGGCATCTAGATCAACCGTACATGTGTTAAAGTAGACAGATCTGAGCCATGTAGCTTATTCGTCCACGTTGGATTAGGTACTCGCTACAACACATCTGTTTGCACAAGATTATGAATTATCTACAAATCAAGAGACATTAGAAACACTATTCGTGGCAAATTATAAATTCTACTGAAGCCACAATGTTATGGTGGGCATTAGCAGAAGTGTTCCACCACTAAAACCAAAAAGCTAActagaataaaacatttaatacaaATGCATCATGGTGAAAACTTCAACAGATTTGGTAAGTCAGTGTGCATCAGACTGTTGCTTGACGTTCAGGGAACCAACGTCGCATCGGTATAAAAGCAGTGATCAGAACTGTCTGTATACAAGGTGAGGGAAGTAGCACTTTTATTAAATTTCCTTTTTGTCATTGCTATTCATACTATATGACTTTTCTTTTGAAAAGATGTTCACCACCTCAACCGATGTACCAGTTCGCCCAAGGGGTGACTGTCAAGTAAATGGAATTAAGCAGGTCCCAAAGTGAGTCAGAGGAAGAATACAGCCTGAACCTGAGACTCAAAGAGTTCGGAAGATGTGACAGACAGACACGGAGCGAAATAAGATCATAGCATGAGATGAAAGTACATTTGCCAGGTGCCTTCTAAAGGATTTCTGCAGGAGGAAAAATCAGGTGATGGCTGGTAAATAATTCAGAGGGAGGCTCAGTCTCAGGCTGGCACGCTCCAGACCAATTAGGCAAGGTCTGTGTACCTTCtcacacacaagtgcacacacatacacaccttcaCCAGCCTGACAGGCCTTGTAATCAGCTTCTGCCCCTGAAAAGGGCTCGGACAAATTACACTGAGATTGGATGACTGGAAAACACAAGATTGGAATgagtgagagaaggaaagaacagTTGGTACACCTGTACCATTATTGGAGGATGGCAAGCTACATTTTGTAGTAACTGCCTGACATATGAATCAATACTGCAAAGCGGGGAAGCAACAAGGACTGAGTCTTTAAACGCTTGCCAACTGCCCTCAGTAACACTTAATATGCTGTGTATCTTAGAACCATATAAATCATACTGAGCTAGatataatgcttttaaatatcaataaatcGACTTACTACTGTACCATTTAAATTGAAAACATTTGTTGCTCAAGGATATATATCTCGAAATATGGAAACAACATACACCAAGCGCTAAGTCCATAAAACTGATTAGGCTCATTTTTGCAGAAGCACCACTCAGCCTTGCTCTTCTTCAGAGGTACTACGTTGGTCCAAGTTGATATATGTTAGTTGTTGGACAAAAGCTGGGCCTAgaccagtttaaaaaaaataacaataatatccGAAGCCTGaggtattataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacagaatccaAGGGTGATCATATACTGATCATCTACACTCCTCTATTCATTCCCCCCCATCCATGATGGCCCCACTTTATACCCCAAATATTCCTCTAATCCAAATATAGTCCCCTCTTCCTACCCCAAACTCCGCCCCCCAATcattaatcataatcataaaaaaggtaaaaacaaGGTCTACTGCGGAATGGCTTTACTCCTCACAGTCAGTAGGGGGCGCCAGAGCCCCTGCGAGCTACTGAGGTGCGGTTGGCATCGTTCTTGCGGCTGGCATTGGCGGCCGGGGGGCTCCGAGCGACGGGCTGCGCCCTCCGCCTGGCGCCTCGATTCCTCCCCCTGGGCCCTGCACGGCCCCTCCCGGCCACTAGGGGTCACTTTTTCCGTGAGTGCAGCGTGTCCTGGAACTTGGTGCTGGTGTAGCGCACGTGGAAGCCCTTCTTGTTGATGGTGTCGTCTGATCGGAACTTAATGACGATGGAGTCGCCGGCCGAGTAGATCTCCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164350 True 2227 lncRNA 0.42 2 25810175 25815041

Neighbor

gene id symbol gene type direction distance location
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding upstream 5733 25762965 ~ 25804442 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding upstream 107050 25686205 ~ 25703125 (+)
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding upstream 138275 25666925 ~ 25671900 (+)
b2ml b2m coding upstream 144877 25662794 ~ 25665298 (+)
bin3 bin3,LOC107665194,LOC107678406,LOC107710841 coding upstream 203311 25563821 ~ 25606864 (+)
LOC113537824 NA coding downstream 102706 25917747 ~ 25919263 (+)
LOC117595683 NA coding downstream 123605 25938646 ~ 25940631 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding downstream 137926 25952967 ~ 25989162 (+)
LOC113546011 LOC108265344 coding downstream 267858 26082899 ~ 26087466 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding downstream 281617 26096658 ~ 26107903 (+)
G139166 NA non-coding upstream 127084 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 358598 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 381987 25421054 ~ 25428188 (+)
LOC113533374 NA non-coding upstream 476562 25309905 ~ 25333613 (+)
G138907 NA non-coding upstream 525227 25277297 ~ 25284948 (+)
LOC113546140 NA non-coding downstream 133808 25948849 ~ 25950449 (+)
G139235 LOC108265343 non-coding downstream 217553 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 697851 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 1063595 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 1076036 26891077 ~ 26894530 (+)
egr3 egr3 other upstream 251444 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 675917 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1796394 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1915450 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 2053061 23750417 ~ 23757114 (+)
LOC117597866 NA other downstream 94534 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 585150 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 747779 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 811012 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1367980 27183021 ~ 27261741 (+)

Expression


Co-expression Network