LOC117597866


Basic Information

Item Value
gene id LOC117597866
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25909575 ~ 25916807 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU164394
CTAAACAATCGGTGTGTATGTTCACAACCCGCcccttttttctgctttatttaaaaGGAAGAATCTGCTGCTGGTTGCAGAATTTACAACACTGAAAATATTCCAACTTGGAAACATGgctttGCTGATGAAGACATTGGTGGGAGGTTTTGTCCTGTTTGGCATTATTCCTCTGATTCATGCCTGCTGGTTGATGGACGCTGGTAgcaaagATCAGTGTCAGGATTACTTGGATTATTCATGGCACCCACATGGATCCACCTGGACAAACCGCTACTGTGTTACATGCACTTGTAGCCCTGGATACATGGTCTGCTGCTCTgaATTTCCAAAGACTAACACCCCTGGCTGCACCCtgaaaaaagactttaaaacatgcaaatataCAGTGATTAAGAGCGACCCATCAATTGAATGTGCAATCAACTACCGTTAATGTTGTTGAGACAGATGTTTCAAAATCAAGGCTCACATATAAGGCCATTGTGCAAACAATAATGTGGAGGTAGAATGTGAGCCTTTTGCAATTTAGAATGAGAAGTTTGATCTTACAATAAAGCATTACACAAA
>TU164395
ggctttGCTGATGAAGACATTGGTGGGAGGTTTTGTCCTGTTTGGCATTATTCCTCTGATTCATGCCTGCTGGTTGATGGACGCTGGTAgcaaagATCAGTGTCAGGATTACTTGGATTATTCATGGCACCCACATGGATCCACCTGGACAAACCGCTACTGTGTTACATGCACTTGTAGCCCTGGATACATGGTCTGCTGCTCTgaATTTCCAAAGACTAACACCCCTGGCTGCACCCtgaaaaaagactttaaaacatgcaaatataCAGTGATTAAGAGCGACCCATCAATTGAATGTGCAATCAACTACCGTTAATGTTGTTGAGACAGATGTTTCAAAATCAAGGCTCACATATAAGGCCATTGTGCAAACAATAATGTGGAGGTAGAATGTGAGCCTTTTGCAATTTAGAATGAGAAGTTTGATCTTACAATAAAGCATTACACAAA
>XM_034306923.1
ttaaaaGGAAGAATCTGCTGCTGGTTGCAGAATTTACAACACTGAAAATATTCCAACTTGGAAACATGgctttGCTGATGAAGACATTGGTGGGAGGTTTTGTCCTGTTTGGCATTATTCCTCTGATTCATGCCTGCTGGTTGATGGACGCTGGTAgcaaagATCAGTGTCAGGATTACTTGGATTATTCATGGCACCCACATGGATCCACCTGGACAAACCGCTACTGTGTTACATGCACTTGTAGCCCTGGATACATGGTCTGCTGCTCTgaATTTCCAAAGACTAACACCCCTGGCTGCACCCtgaaaaaagactttaaaacatgcaaatataCAGTGATTAAGAGCGACCCATCAATTGAATGTGCAATCAACTACCGTTAATGTTGTTGAGACAGATGTTTCAAAATCAAGGCTCACATATAAGGCCATTGTGCAAACAATAATGTGGAGGTAGAATGTGAGCCTTTTGCAATTTAGAATGAGAAGTTTGATCTTACAATAAAGCATTACACAAAACAATTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164394 True 570 TUCP 0.41 4 25909575 25916798
TU164395 False 453 TUCP 0.42 3 25916090 25916798
XM_034306923.1 False 529 mRNA 0.40 4 25909625 25916807

Neighbor

gene id symbol gene type direction distance location
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding upstream 105133 25762965 ~ 25804442 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding upstream 206450 25686205 ~ 25703125 (+)
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding upstream 237675 25666925 ~ 25671900 (+)
b2ml b2m coding upstream 244277 25662794 ~ 25665298 (+)
bin3 bin3,LOC107665194,LOC107678406,LOC107710841 coding upstream 302711 25563821 ~ 25606864 (+)
LOC113537824 NA coding downstream 940 25917747 ~ 25919263 (+)
LOC117595683 NA coding downstream 21839 25938646 ~ 25940631 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding downstream 36160 25952967 ~ 25989162 (+)
LOC113546011 LOC108265344 coding downstream 166092 26082899 ~ 26087466 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding downstream 179851 26096658 ~ 26107903 (+)
G139172 NA non-coding upstream 94534 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 226484 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 457998 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 481387 25421054 ~ 25428188 (+)
LOC113533374 NA non-coding upstream 575962 25309905 ~ 25333613 (+)
LOC113546140 NA non-coding downstream 32042 25948849 ~ 25950449 (+)
G139235 LOC108265343 non-coding downstream 115787 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 596085 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 961829 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 974270 26891077 ~ 26894530 (+)
egr3 egr3 other upstream 350844 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 775317 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1895794 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2014850 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 2152461 23750417 ~ 23757114 (+)
car15 LOC108264895 other downstream 483384 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 646013 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 709246 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1266214 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 1350368 27267175 ~ 27295337 (+)

Expression


Co-expression Network