G139235 (LOC108265343)


Basic Information

Item Value
gene id G139235
gene name LOC108265343
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26032594 ~ 26036133 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU164434
tattttattccttacataaaacacaagatgcatcacacacaccctttgcattattgtgaaaaatatatatattaatacacaactcctcatttttttatttgtacataaCACACTTTGATGAATGTCGTCCAAACCGACGAGCGCTTTGGAAAACCCAAGTATTTCAAACGAATGCCTTCATGATGACTTAAACACCACAAACTGCAGTTCTGACTGCAGGGGCGCTGAACATGCACAAAccccaactacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcctccaAAAGCTTCAAACATGGATACATATCATGTCACCAAATACCTCAAGACTGTTATAAACATACACAGCTCtctttacacacatacacacaccctcctACACAACATTACTGTCCCAGTAGGGAGTGTCAGGAGACCAAAGGCAAGGTCATTGCATTtaagttacacacacaaaaatggagaaagaaagaatcaggAAGAGAGGtagaaagaaaataatctagacagacagaaagaatgaTATTTGGAACCGCCAAGGGTTCATATCAGATTCAAGAACCCTGGAGAAATACagcatgtatatatgtatgtgttcAAGTGATAAACTGCACAATACTGTGGACCTTATTGTCCAAATGCAAATATAGCAACGTGGCCCATCAACTGGAGTGTGATTATTCATCAGATTTCAATGACCGTCATTATACAATCATCAATAgcttaattactgtaattaagACAAGATGACAGTGTCAGTTTTAATCACAATCTACATGTCAGTGTCTGTGCAACAAAATCCAGCATATGAAGGAGCCCTAAAGAAAACAGCACTGAAATGGCAGAACAACCCTGCAACTGCACTGCAATCAGGGGTtggtgggtttcctcagggttcgctggtttcctcccaccttccaaaaacatgctggtaggtggattggagactccaaattgcccctaggtatgaaagagtttgatggatgatggactggtgtcccatccaggatgtattcctgcctcgtaCCCAGCGTTCCGGggaataggctccggatccaccacgtccctgaccaggataaagcacttactgaagatgaataaatgtttcTATCATGTCACAACATGTTTATGGTCATGCATTAAGCAAAGTTAATATCGAGGCTCAGGAAAcggaaaatcacaaaaaaatgccAACCCATATGGATAAATTCAATGTCAGGaagcaagaattaaacactaAGACCGTTGATGATAATATTAGTGCTATTGTGTCAACCTGTGCAATCATCTGAACGTGGTGTTAAAGTGTAGCTCAATAACACTCAAAAGCGAGAACTTCTCCATTGGTGGGGATTTTTCCATCACCAGTGTAAGTAGGTGATATTAAGGAAGTGCACCATGTAAGAAATAAGTTTACATTTCCGCAAGGATGCTTCCTTCCAGGCTCAAGTGCACACTCATCTGAAAACCATGAGCATATCAGATTCTCTCTCAGCATAGGAATAAACTGAGGTAGGCAAAGAACACACATTTGGGTTTGCATTGTAGTTCAATCCAGGTAAAGACCACGCCTCAGCAAGTATGTGCTTCATTCTTGCATACAGTTTCTTGTTTTCACATAAGGATTCTACCTTTTCTCTAGTAGACACTACAAAGATACTTTCTCAGCATCCTTCCATCAAAAAATCATCTCAATTGAAAGGATGCAGAGATGAACAGATTAGTACGTAGACCACTTTAGTGCTTCTCCTGAGGTCCTTTACGATGAAAAGGCGCAGATAGAAACGGATCATCAGAGTTTACTTCAGGTCCCTCGTAATGTCTGGAGTATTTCGCTAAAGCCTGAGGTCGAAAGGGCAAAGGGGCTACTTGATCAAGGACACTCTGATCATGGCTTCCATGATTAAAAGGCACCATATTGGAACGCTGCATCCCAGCCTGTGGGACTGGATGAGTGTAAACCGTCCCCcatgtttcctttttctttccaaatGGCGCCTGGAGGAAGACGTCTGGTTGTTGAGACGAAGCCTGTGGACGAGGAAACGGAGCGTTCGCAAACACATCCACGTCGCTGTCGTCTTCCTGCACCACCCGAAAAGGCGCTTTGGAGAAGACATCAGCGTCGGGCTCGGAGAGCTGGATTAAGTGGTTCTGAGAGGGCAGATGGGTAATCAGAGGGGACTGTGGGACGTCACTGGGTTCAAGGTTCGAGGATGTCTGGAGGTTTCCTGAGGCATCCAGCTCTTGTTCTTCGTCCTCCTCAAAGTCCTGCAACAAAGGTCTCGAGCCGCTGCAGTCGAGGCTTGAAGCTTCGCTCGGCCTGGCATCACCCGTCCTCTCGTCTTCATCCTCGTCGTCTTCATCGCTGGAGTGCATCCAGTCTTCAGTGGGGTTTTCTGCTTCGTCACCTAAAAGCTCGCCATAGCCGTTAGTCTTCCCCTTGGCTTCTGGAGAACAGAGAGACAAGAAAAAATGACATCAGTGAGTACTGACAGTGAGTGCTCACAGTCTGTGGTAGATTCAGCAAGATGACCTGTGAGGTCGAACTAGGACGACAGAGGTGCTAACACAAACACTTGATGTGAATAAGATACTATGTGAGATGCCATTTTGCTGATTCTACCTTATAGATTTTACCTTACAGTTACTGTAGATGTAGTCGATCAggcaagacatgtttggtgtccgaagtttgcttctttacttTTGCACAAAAGCTACAAGGCTAAAGTAGGTAACAAGTAACATTTGTAGTACACAACTAAAAGAGCACAACATGTTTTGGCTGGTGGAGTACCTGTTTTGGAGTAATGACAAAGTTGTGTGCATCTTATTTTCCGTGAATACAATCCTTTTAATCGTGACAATGTTTTTAACTTTCTTTGTGAGAGATGTTTAAAGTAAAAGGCACAAACACAGACTAGGAGACCAAACAAATGAGCtcttgtcaaaaaaaaaaaaaaaattcacatacaCTAACAAGCAATAATTCACAACGACGCTATGGAAGAACACCAAATATCTACAACACTTCTACATCCCAGCCCACAAACAACAGCTACCATAGAAAGACTTCAGCCTTGTTTCCACATATTGTAAAAATAAGCTGTgtataaaatcttaaaaaaaaattaaaaaaagtatgtcTTGGTGTCACATGGGATACAAATAGGAtgaaaaatgttagaaattttttttacatggttcAGTGAAAGTGGGAGAGATACTGTATTAAATGGAAATGTATGGAAATCTGTAACGCTAAGACTCATGGAAACAAGGAAGGCAAAGTCAGACATaagatacagatacagtgaCGGAGCAAACTCTTaccttcagactgtggacagaGGGTAGCGCATGTAGGAAAGGTTAATATAG

Function

NR:

description
PREDICTED: AP2-associated protein kinase 1-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164434 True 3440 lncRNA 0.42 2 26032594 26036133

Neighbor

gene id symbol gene type direction distance location
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding upstream 43432 25952967 ~ 25989162 (+)
LOC117595683 NA coding upstream 91963 25938646 ~ 25940631 (+)
LOC113537824 NA coding upstream 113331 25917747 ~ 25919263 (+)
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding upstream 228152 25762965 ~ 25804442 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding upstream 329469 25686205 ~ 25703125 (+)
LOC113546011 LOC108265344 coding downstream 46766 26082899 ~ 26087466 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding downstream 60525 26096658 ~ 26107903 (+)
npc1l1 npc1l1 coding downstream 288283 26324416 ~ 26341597 (+)
myl7 myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582 coding downstream 332282 26368415 ~ 26371797 (+)
tbc1d10aa tbc1d10a,LOC108265670,LOC108441901,LOC106579927 coding downstream 337677 26373810 ~ 26397861 (+)
LOC113546140 NA non-coding upstream 82145 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 217553 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 349503 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 581017 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 604406 25421054 ~ 25428188 (+)
G139551 NA non-coding downstream 476759 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 842503 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 854944 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 1070796 27106929 ~ 27108878 (+)
G139756 NA non-coding downstream 1302860 27338993 ~ 27341506 (+)
LOC117597866 NA other upstream 115787 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 473863 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 898336 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2018813 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2137869 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 364058 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 526687 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 589920 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1146888 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 1231042 27267175 ~ 27295337 (+)

Expression


Co-expression Network