G139551


Basic Information

Item Value
gene id G139551
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26512892 ~ 26519482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU164826
CGtttgtaaaaatttatattatttattttatgtgatgaggtcacttcctgttagtGCTCCAGGTTCTGCATGAAAACAATGAGACAGACATAGTGTGCTCTCTCTGATAATCCATTGCATCCACTAAAAAGCATCGTAGAGGCAATGCCTTTTCACCGCAAATGTTAATGAGGAAGAGTGACAGTAAATGAGCAACCTTACTACGACTCTGTTTTCATTGGCTACGGTTTAACTTGGTGTTTAGTCAGAGTTGCAACACCCTGCACGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164826 True 269 lncRNA 0.40 2 26512892 26519482

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_2 NA coding upstream 35433 26477387 ~ 26477459 (+)
trnaa-agc_1 NA coding upstream 36015 26476805 ~ 26476877 (+)
trnaa-agc NA coding upstream 36542 26476278 ~ 26476350 (+)
hpdb hpd,LOC108264894,LOC108441909,LOC107723232 coding upstream 37401 26468319 ~ 26475491 (+)
aplnra aplnr,LOC108441910,LOC107753098,LOC107703172,LOC107687998,LOC107550977,LOC107554406,LOC107712463 coding upstream 75188 26435516 ~ 26437704 (+)
fzd10 LOC108266036,LOC108441898,LOC103024082,LOC107574912,LOC107659609,LOC107669258,LOC107723249 coding downstream 25175 26544657 ~ 26548008 (+)
piwil1 piwil1 coding downstream 72576 26592058 ~ 26602240 (+)
stx2b stx2,LOC108441897 coding downstream 85039 26604521 ~ 26619702 (+)
adgrd1 adgrd1 coding downstream 215900 26735382 ~ 26787981 (+)
ulk1a LOC108265551 coding downstream 273584 26793066 ~ 26817793 (+)
G139235 LOC108265343 non-coding upstream 476759 26032594 ~ 26036133 (+)
LOC113546140 NA non-coding upstream 562443 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 697851 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 829801 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 1061315 25448615 ~ 25451577 (+)
G139647 NA non-coding downstream 359154 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 371595 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 587447 27106929 ~ 27108878 (+)
G139756 NA non-coding downstream 819511 27338993 ~ 27341506 (+)
G139807 NA non-coding downstream 1040908 27560390 ~ 27569085 (+)
car15 LOC108264895 other upstream 50571 26400191 ~ 26462321 (+)
LOC117597866 NA other upstream 596085 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 954161 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 1378634 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2499111 24011582 ~ 24013781 (+)
LOC117597788 NA other downstream 43338 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 106571 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 663539 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 747693 27267175 ~ 27295337 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other downstream 885968 27405450 ~ 27490461 (+)

Expression


Co-expression Network