G139686


Basic Information

Item Value
gene id G139686
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27106929 ~ 27108878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU164991
aGCATTCTATAATATCGGCTTCACCGTTAAAACAAAACTAGAGGCATGCTGGATCGATATTTCTATAAGCATCCAAAACATAAAAGGAGGAGaatttagtgtaaaaaaaaacaatgaagcaattttaaaaaagggataaaaacattacaaattcaTTCTCTCtaaaagcatgcacacacacacacacacacacacacacacacacacacacacacctcaaacaggCAGCATTTCCAAATCAGTTTATGGACAATCACATCCAcaatcttcacacacacacacacacacacacttctccatcagCTTGTGCTTTACTTAATAACAGCGTAAACATGTTCAGCTTTCCAACAACAGCTACATCCTACACATTAACACATCACATGTTAGGCTGAGATTGTTTTGCTAAACATGACTATTTCATAGAAAGagtgatattgtgtgtgtgtgtgtgtgtgtgtgttatattgtgCTTATTATTGAGTCTGCTTAGGGTTGATCTTACTTGGGTGGATCGAATGTGCTTTTCTATTTTGTGCCTTTAGGGGGCGAGAGCATGTGTGCCTCAAAACTATGGCTGCGTCCTAATACCGTTTTCCACACACCCTCGTCGGCTTCCTCCTGGAGGATTCGGTGTCGCGGCCATTTCTAAGGCCATTTCTTTATCACATCACTGAGGTAAAGTTTATTAGATGGCGTCAGTTTGTAGAAGTCAAGAACGTACCTGGAAGTTATTGCAATCTCggctttaaacagaaaaaaaaacataacgtCAGCGGAATCTGTTTAtagatttaattattaaaaatggaatattttaaaaatataactatGTGACAGTTGACATCAATtctttgctagctagctaattccCACACCAAAAAGACGCTGTTTatccgatttttttttttcccacctggagCAAAAAAGTTTTGGTGAGAGTATTGTGTTTGCTAatttttttagctagctagcctacCTCCTTTCCTTACCATAGAACTGTTTTAGTTTAGCTAGTCAGCTAATGTTACCCATCTAATTCGCTAGCTATACTTTTGTACTTTAAAATCAAAGTAAATCAAAGCCCTTGTTTGCTTTTGGTGTGTCTATTTGTttaactgttttattctctaCTTTGTTTTTCAAGTTGGAAAGctaattttagctagctagttgctTAGCGTTgtttataacaataaaacaataacgcTGCATGAATACAACTCAGATTACTTACCGTTTGCACAGTTAGCTAGCAAATATTTCTAGGCAACTTAATTGCGTGGATTTCTTAGCTAGTCAGAAAGCTAGCTAATTGTGATCGTATTGAAAAATCCCCTCCCTCTGCACACTTCATCTTGCGCTGCAAGTGGCCACTCGCGTGATATAGGCGATACGTACGCACTGTAAGAGTTTTAAGTGGACGCCGATGAGGACGTGTTTTGAAAACAGTTTTGAAATACAGGAAAAGCATTGACAACAATCTTCTCAGTCTTTAAAACCCTGAATCTTCTAAAACCCTGAACACTTCCTGGTCAATCGTAACGCTGAAGACCATCCGGACCATCCTGTGTGACGAAAGCAGATACGTTTCACACAGTAATAAGGTAATAAGTACCATCACTCCATATAATTGAAAATACTGGCTTTAGGCGAGCCACGTGAGGACGGACTACATCGATCACACGTGTGGAGAAGACAGGCTGATCTCAGGCTCTTCTGCAGGGACATGAAGAGCACATCAGGAGTGTGAGGACTGACGGAGGGAAGAGCGTCAGAGGTGTAGGAGCTTCTTCACATGGAGGTGGAACCATCCGGTAAACACTGCAGCTGCTTCTCAATGATGAAGCGCAGATACTT
>TU164992
aGCATTCTATAATATCGGCTTCACCGTTAAAACAAAACTAGAGGCATGCTGGATCGATATTTCTATAAGCATCCAAAACATAAAAGGAGGAGaatttagtgtaaaaaaaaacaatgaagcaattttaaaaaagggataaaaacattacaaattcaTTCTCTCtaaaagcatgcacacacacacacacacacacacacacacacacacctcaaacagcCAGCATTTACAAATCAGTTAATGGACAATCACATCCAcaatcttcacacacacacacacacacacacacacttctccatcagCTTGTGCTTTACTTAATAACAGCGTAAACATGTTCAGCTTTCCAACAACAGCTACATCCTACACATTAACACATCACATGTTAGGCTGAGATTGTTTTGCTAAACATGACTATTTCATAGAAAGagtgatattgtgtgtgtgtgtgtgtgtgtgtgttatattgtgCTTATTATTGAGTCTGCTTAGGGTTGATCTTACTTGGGTGGATCGAATGTGCTTTTCTATTTTGTGCCTTTAGGGGGCGAGAGCATGTGTGCCTCAAAACTATGGCTGCGTCCTAATACCGTTTTCCACACACCCTCGTCGGCTTCCTCCTGGAGGATTCGGTGTCGCGGCCATTTCTAAGGCCATTTCTTTATCACATCACTGAGGTAAAGTTTATTAGATGGCGTCAGTTTGTAGAAGTCAAGAACGTACCTGGAAGTTATTGCAATCTCggctttaaacagaaaaaaaaacataacgtCAGCGGAATCTGTTTAtagatttaattattaaaaatggaatattttaaaaatataactatGTGACAGTTGACATCAATtctttgctagctagctaattccCACACCAAAAAGACGCTGTTTatccgatttttttttttcccacctggagCAAAAAAGTTTTGGTGAGAGTATTGTGTTTGCTAatttttttagctagctagcctacCTCCTTTCCTTACCATAGAACTGTTTTAGTTTAGCTAGTCAGCTAATGTTACCCATCTAATTCGCTAGCTATACTTTTGTACTTTAAAATCAAAGTAAATCAAAGCCCTTGTTTGCTTTTGGTGTGTCTATTTGTttaactgttttattctctaCTTTGTTTTTCAAGTTGGAAAGctaattttagctagctagttgctTAGCGTTgtttataacaataaaacaataacgcTGCATGAATACAACTCAGATTACTTACCGTTTGCACAGTTAGCTAGCAAATATTTCTAGGCAACTTAATTGCGTGGATTTCTTAGCTAGTCAGAAAGCTAGCTAATTGTGATCGTATTGAAAAATCCCCTCCCTCTGCACACTTCATCTTGCGCTGCAAGTGGCCACTCGCGTGATATAGGCGATACGTACGCACTGTAAGAGTTTTAAGTGGACGCCGATGAGGACGTGTTTTGAAAACAGTTTTGAAATACAGGAAAAGCATTGACAACAATCTTCTCAGTCTTTAAAACCCTGAATCTTCTAAAACCCTGAACACTTCCTGGTCAATCGTAACGCTGAAGACCATCCGGACCATCCTGTGTGACGAAAGCAGATACGTTTCACACAGTAATAAGGTAATAAGTACCATCACTCCATATAATTGAAAATACTGGCTTTAGGCGAGCCACGTGAGGACGGACTACATCGATCACACGTGTGGAGAAGACAGGCTGATCTCAGGCTCTTCTGCAGGGACATGAAGAGCACATCAGGAGTGTGAGGACTGACGGAGGGAAGAGCGTCAGAGGTGTAGGAGCTTCTTCACATGGAGGTGGAACCATCCGGTAAACACTGCAGCTGCTTCTCAATGATGAAGCGCAGATACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164991 True 1857 lncRNA 0.40 2 27106929 27108878
TU164992 False 1853 lncRNA 0.40 2 27106929 27108878

Neighbor

gene id symbol gene type direction distance location
ccdc92 ccdc92 coding upstream 6179 27079096 ~ 27100750 (+)
ncor2 ncor2,LOC107753125,LOC107684513,LOC106585520 coding upstream 117347 26889333 ~ 26989582 (+)
ep400 ep400 coding upstream 249946 26819957 ~ 26856983 (+)
ulk1a LOC108265551 coding upstream 289136 26793066 ~ 26817793 (+)
adgrd1 adgrd1 coding upstream 318948 26735382 ~ 26787981 (+)
ogdha ogdha,LOC108411168,LOC108265558,LOC107756845,LOC107691557,LOC107566960 coding downstream 189014 27297892 ~ 27331548 (+)
ppiaa ppiaa,LOC108265559,LOC107691558,LOC107756846,LOC107722998,LOC107702873,LOC108411171,LOC107591938 coding downstream 224493 27333371 ~ 27338168 (+)
LOC113546107 slc18a1,LOC106527823,LOC107702874,LOC107591929 coding downstream 238503 27347381 ~ 27360862 (+)
tti2 tti2 coding downstream 254645 27363523 ~ 27370047 (+)
nr5a1a LOC108266031 coding downstream 401825 27510703 ~ 27530908 (+)
G139647 NA non-coding upstream 207512 26878636 ~ 26899417 (+)
G139653 NA non-coding upstream 212399 26891077 ~ 26894530 (+)
G139551 NA non-coding upstream 587447 26512892 ~ 26519482 (+)
G139235 LOC108265343 non-coding upstream 1070796 26032594 ~ 26036133 (+)
LOC113546140 NA non-coding upstream 1156480 25948849 ~ 25950449 (+)
G139756 NA non-coding downstream 230115 27338993 ~ 27341506 (+)
G139807 NA non-coding downstream 451512 27560390 ~ 27569085 (+)
LOC113546137 NA non-coding downstream 495039 27603917 ~ 27610560 (+)
G140170 NA non-coding downstream 502069 27610947 ~ 27611335 (+)
G140236 NA non-coding downstream 663566 27772444 ~ 27773644 (+)
rimbp2 rimbp2,LOC108414005 other upstream 376983 26626053 ~ 26729946 (+)
LOC117597788 NA other upstream 538997 26562820 ~ 26567932 (+)
car15 LOC108264895 other upstream 644608 26400191 ~ 26462321 (+)
LOC117597866 NA other upstream 1190122 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 1548198 25551894 ~ 25558731 (+)
fam160b2 LOC108265858 other downstream 74143 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 158297 27267175 ~ 27295337 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other downstream 296572 27405450 ~ 27490461 (+)
G139781 NA other downstream 319849 27428727 ~ 27429477 (+)
dbnlb dbnl other downstream 729367 27838245 ~ 27859702 (+)

Expression


Co-expression Network