fam160b2 (LOC108265858)


Basic Information

Item Value
gene id fam160b2
gene name LOC108265858
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27183021 ~ 27261741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU165045
GAGCGACTGCAGCTCCTTGCGGGTGAACTTGGTCTGAGCCTGCAGCTGCTCCAGGCCCTCGGGTTGGTGCCTGACGGTGGCCAGCTCCAAGTCGCTGTCGCTGCTGTCACCCTGCTCTTTAGGGCCGCTGCTGGTGATGATCCAGCGGAGCAGGCAGCACCTCATCAGGGCCTTCCGCGTGAACCGTGGCCTCGTTGCTGGTCACGTGTTTGGAGTTGACCGCTTTTTACCAGCCTTTTGAAGACCATGAGACACGTGGTGCCTTTAAAACAGTCAGGAATTGACTGGATGAATGATGATAATTAACTTTCAGCTTCTATagtagaaaaaatatttaaagtgatAAAGGTGAGTTCTTCCTCAGtcactacactaacactaaaactgagaaaaatggCTCCAAAGTTATTTTCATATCCATCCAAATGTGAAGATGCAGTGgccttatttaatatttatattgtgtatttttatacacagaAATTTTgacaaaacttttatttttagtcagatcgtgtattttttaaatatcaaccAAAATTATAGCTATTCTGATTTGATCAAAATCCATTAATGCACATTTTCCTTTGCAACTTAAGCGGCATCGTCAAGATAATCCTCGCTGCTGAACCAAAcgtccagggggtggagctggacctgatccaactcctcctataaACCTAACTCTAACCCACTAGACAATacaaaacagcacacacacttatccagcATGAAACACCGAGTTCTCTCCACCCTCTGGGGTTTTGGGTTGAATCTGctcaggtaggaggagctggatcaggtccgactccaccccctggagtCTTCGTTCTGCAGTAAGGGGTATTTGGCGTAGTTAGCTCTAGTAGAGCGATGATTTAGTGTGGTAGAGAAGATCACCTTTATCTGTACATCATGAAATAGATAATACCTACGCTTAATCGGCTGCCCAAAAGTGCTGCTTTTTTTGAATTCAAGTGTTCATGCTCAAATTTTGCACATTGAATGTTAAGCTATATCGTATAGCTGATTATTGTTAAATGTCTGGTTAGTTAGCGAGCTACGTTTGAGGTAAGGGAGAAACATAACGCAAATTTGATTTTACAGCTTTGACCTTAGCGTAAGATAGAAGATTTCTATGCTCGGTCCAAACGTTATCCAAGTTGGATCATTAACCCAGGAGTTAAATTTCACTGCGGATTGATAATCCTAAAAAAGTCTCGATTTGTCTCGAGACCAAACAGCACAATCTGATGATTAACCTGAGTTTGAAGGATCCTGAGCCATCGCACATCTCTCATTTCACCGTTcatactctgttttttttcgTCTCACATAGTGACGGCAGAATTATCGCCTTTAATGCGtatttcatgtttaaaatgatcataTCGTAGTGACATATTTAGGAGACTCAAACTTTTTCTGCTCATTAGTcttatatcattatttatattataataataatattattacaggCTTTGAAATAAGTATGGAAAAAGACTTCTGTCATCTTTACTAAGTGTGGTACTTTACATATggacatttattaatatttgttttaattgctGAACCAAACATTAAGGGTCTGCAGATGTTTCTGGTCATGTTTCATCATCtgatttctcttttcctctgtaTTATTTTCCTAATGAGTCACAGTCCTTATCACTGTGATGGTAATCAAGATGTTCTCAGAGTCTGTATCGCTTAAcacggggctcagacacagcaTCGTGTGTGACTTCTGTGTCTCTGATGAATTCAGTGCTTGTTGCTGAAGGACTGGACTTGTATACATGAAACAATCTGATCTGTGTAAACATGGATGATATAAAGATGAAAATCATGACAC
>XM_026945811.2
CTGACGTGTTGAAGGAAATGTGTCCAAACAAACTGGCTAAGCTCAGCTTAGCttcaaataaaaattataatgagTGACTCGTCATATTTTCGTGATTAcagacatttgtaaacaaacaaacaaaaaaatcctacGATGgatatgtttaataaattgaCGACTCTTTTCCAGCAGGCCCTGGAAACTAGAGAGCCTTCAGTAAATCTGCTCGACTCTTTCGTCGATCATTGGAAAGGAATAACCAACTACTACATTGAAACTACAGATGAGGCGCAGCCGGTGAAGCAGACAGACATCCCATGGAGACTAAAGCAGATGCTGGACATCCTGGTGTACGAGGAGAGACAGCAGGAGGTGGAGGAGACGGGGCCCTGCATGGAATACCTGCTCCAGCACAAACTACTGGAGACACTGTGCACGCTGGGAAAggcacagTATCCTCCCGGAATGAGCCAGCAGGTCCTGCTGTTTTTCTCCAAACTCCTGGCGCAGATCCAGAAGCCCATACTGCACGTGATTAACGTATATCGACCTGTACAGAAGCTGATTCGTCTGTGTGGGCTCCCTGATTCGCAAACAGAGAGGGAGGAGTCGTTGTTTCTCTTTTCCGTTTGTTCTCGTGTGAAGAAAGACCCGTCCGTCCTCAACTACATCCTGGAGACTAGTAAAGAAGGCCAGCCTCAGAGATGTAGCTCTGTGTCAGAGGAAGGTGTAGAAGGAGCCAGTGGCGGATCCAGTCCAGAGAACTCGGCTTCTCCTTCCGCGCAGAGCTCAAGCCAGCCAGACACGGGTTTTATCCAGATCCTCGTGCAGCTTGGGAAAAGCCAGaaaagCCGCGTTGCTTTGCGAGCGATGGAGAGCATGCTGCTCCTGACCAGCATTCCTCAGGAGGACACGGCCAAGCTTCTGGCAGAGCAAACTCCACTGTGTGACTTTCTGgcacagagagtgtgtgagctcTACGGCGCTATCCCCACCACACTCCATCCTGAGGACATACACAGCTACACCGTCAAGCAGTGGAGGACTCAGTCATCCCCGGTCAGCGCGGAGGAAAGCCAGTCGTTTCCAGCGCAGGAGCACATGGACAGGTTCTTCCGCTGGCTCGACTACTGCGACCAGCTCATTAAAGATGCACCAGAGGTGCTTGCTGTTAAACTTGCCAAGGCTCTTCACCAGCAGTGGCTTACTGGAATCATTGAGCCTCAGCTGCTACAGATGTCAGAGGTTGGCGTTCTGGTCCACACGGCTCTCCTGTCACGCTGCGTCAATCACACACAGTCCGCCATCCTGCTGCACGAGCTGGTGCACTTCCTGCTGGGTGGCGACACGCACCGGGAGCAGTCGACCGCCACGcccccgcacacacacacgctgcgcTACAGTCTCATCAAACACTGCGACCACATCTCAGACGAGATTAGCATCACTACATTACGGCTGTTCGAGGAACTCCTGAAGAAGCCCGACAAACACATCCTGACCAACCTGGTGCTGCGGAACATCGAGAGTCGATCCTATAGGTTGCCGGTTTCAGGGGGCTGCGACGAGAGACCAGGAACTGATCCTGATTTCCTGGAAGAGTCAGAagagatggaggaggatcCTTTCTTCACGGAAAGTGAGTTCAGTGGCTCGGAGCATTTGCTGTCCTTGTCCAGGGAAGAGAGAAagtccagcacacacacacagatagctgAAACTGTTAACAGTTTCCTCTGTTTAGTTCCCCAAGAGGCAAAAACATCCCAGCATGTACAGGGAGCAGGATATGACACATACGTCCACGATGCTTTAAAATTGCTGAAAGAGTGTTCGGCTGTGTCTGCGGACTGGGGTTGGCCGGACACCCCAAAACCGATCGAAGTCCAGTCCAGCAGTTCAGACTTCTACGAAGGACACTTCCTCAAAGTACTGTTGGACAGGATTTCACGCATACTGGAGCAGccgtATGAGCTGAACCTACAGGTGACGTCAGTGCTGTCTCGGCTGGCCGTGTTTCCTCACCCTCATCTTCACGAGTACCTGCTGGACCCCTACATTAGCCTGAGCCCTGGCACTCGTTCGCTCTTCTCTACACTCGTCCGAGTGATCGGCGAGCTGATGCAGAggatccagcacatcccaaactTCACCCAGAGACTCGTCACGGTCAGGAAGCAGCTCATGGGCCTCGAGGAGGAGACTGTAGTGGATCATGGCACCCTGTTGAAGGGCGTGATCGTACTGGAGGAGTTCTGCAAGGAGCTCGCAGCCATCGCCTTCGTCAAACTCCCTGTGGGCGATCAGGAGCATCTCTCAGCCCCTTAAACAAACGCAGGGCTGAATCTTCAGGTGCTTCAGAGTTCACGTGTTTGCACAGAGGAAGGCGGGACTGTCACTGCAGGGTACAATACACTGGCATGGGTCACTTTCCTCACGCATGGGTACGGTAAGGGTCGGTACCGTTGCTGGTCACGTGTTTGGAGTTGACCGCTTTTTACCAGCCTTTTGAAGACCATGAGACACGTGGTGCCTTTAAAACAGTCAGGAATTGACTGGATGAATGATGATAATTAACTTTCAGCTTCTATagtagaaaaaatatttaaagtgatAAAGGTGAGTTCTTCCTCAGtcactacactaacactaaaactgagaaaaatggCTCCAAAGTTATTTTCATATCCATCCAAATGTGAAGATGCAGTGgccttatttaatatttatattgtgtatttttatacacagaAATTTTgacaaaacttttatttttagtcagatcgtgtattttttaaatatcaaccAAAATTATAGCTATTCTGATTTGATCAAAATCCATTAATGCACATTTTCCTTTGCAACTTAAGCGGCATCGTCAAGATAATCCTCGCTGCTGAACCAAAcgtccagggggtggagctggacctgatccaactcctcctataaACCTAACTCTAACCCACTAGACAATacaaaacagcacacacacttatccagcATGAAACACCGAGTTCTCTCCACCCTCTGGGGTTTTGGGTTGAATCTGctcaggtaggaggagctggatcaggtccgactccaccccctggagtCTTCGTTCTGCAGTAAGGGGTATTTGGCGTAGTTAGCTCTAGTAGAGCGATGATTTAGTGTGGTAGAGAAGATCACCTTTATCTGTACATCATGAAATAGATAATACCTACGCTTAATCGGCTGCCCAAAAGTGCTGCTTTTTTTGAATTCAAGTGTTCATGCTCAAATTTTGCACATTGAATGTTAAGCTATATCGTATAGCTGATTATTGTTAAATGTCTGGTTAGTTAGCGAGCTACGTTTGAGGTAAGGGAGAAACATAACGCAAATTTGATTTTACAGCTTTGACCTTAGCGTAAGATAGAAGATTTCTATGCTCGGTCCAAACGTTATCCAAGTTGGATCATTAACCCAGGAGTTAAATTTCACTGCGGATTGATAATCCTAAAAAAGTCTCGATTTGTCTCGAGACCAAACAGCACAATCTGATGATTAACCTGAGTTTGAAGGATCCTGAGCCATCGCACATCTCTCATTTCACCGTTcatactctgttttttttcgTCTCACATAGTGACGGCAGAATTATCGCCTTTAATGCGtatttcatgtttaaaatgatcataTCGTAGTGACATATTTAGGAGACTCAAACTTTTTCTGCTCATTAGTcttatatcattatttatattataataataatattattacaggCTTTGAAATAAGTATGGAAAAAGACTTCTGTCATCTTTACTAAGTGTGGTACTTTACATATggacatttattaatatttgttttaattgctGAACCAAACATTAAGGGTCTGCAGATGTTTCTGGTCATGTTTCATCATCtgatttctcttttcctctgtaTTATTTTCCTAATGAGTCACAGTCCTTATCACTGTGATGGTAATCAAGATGTTCTCAGAGTCTGTATCGCTTAAcacggggctcagacacagcaTCGTGTGTGACTTCTGTGTCTCTGATGAATTCAGTGCTTGTTGCTGAAGGACTGGACTTGTATACATGAAACAATCTGATCTGTGTAAACATGGATGATATAAAGATGAAAATCATGACA

Function

NR:

description
protein FAM160B2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165045 False 1855 lncRNA 0.40 3 27183021 27261741
XM_026945811.2 True 4107 mRNA 0.47 18 27248587 27261740

Neighbor

gene id symbol gene type direction distance location
ccdc92 ccdc92 coding upstream 82271 27079096 ~ 27100750 (+)
ncor2 ncor2,LOC107753125,LOC107684513,LOC106585520 coding upstream 193439 26889333 ~ 26989582 (+)
ep400 ep400 coding upstream 326038 26819957 ~ 26856983 (+)
ulk1a LOC108265551 coding upstream 365228 26793066 ~ 26817793 (+)
adgrd1 adgrd1 coding upstream 395040 26735382 ~ 26787981 (+)
ogdha ogdha,LOC108411168,LOC108265558,LOC107756845,LOC107691557,LOC107566960 coding downstream 36151 27297892 ~ 27331548 (+)
ppiaa ppiaa,LOC108265559,LOC107691558,LOC107756846,LOC107722998,LOC107702873,LOC108411171,LOC107591938 coding downstream 71630 27333371 ~ 27338168 (+)
LOC113546107 slc18a1,LOC106527823,LOC107702874,LOC107591929 coding downstream 85640 27347381 ~ 27360862 (+)
tti2 tti2 coding downstream 101782 27363523 ~ 27370047 (+)
nr5a1a LOC108266031 coding downstream 248962 27510703 ~ 27530908 (+)
G139686 NA non-coding upstream 74143 27106929 ~ 27108878 (+)
G139647 NA non-coding upstream 283604 26878636 ~ 26899417 (+)
G139653 NA non-coding upstream 288491 26891077 ~ 26894530 (+)
G139551 NA non-coding upstream 663539 26512892 ~ 26519482 (+)
G139235 LOC108265343 non-coding upstream 1146888 26032594 ~ 26036133 (+)
G139756 NA non-coding downstream 77252 27338993 ~ 27341506 (+)
G139807 NA non-coding downstream 298649 27560390 ~ 27569085 (+)
LOC113546137 NA non-coding downstream 342176 27603917 ~ 27610560 (+)
G140170 NA non-coding downstream 349206 27610947 ~ 27611335 (+)
G140236 NA non-coding downstream 510703 27772444 ~ 27773644 (+)
rimbp2 rimbp2,LOC108414005 other upstream 453075 26626053 ~ 26729946 (+)
LOC117597788 NA other upstream 615089 26562820 ~ 26567932 (+)
car15 LOC108264895 other upstream 720700 26400191 ~ 26462321 (+)
LOC117597866 NA other upstream 1266214 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 1624290 25551894 ~ 25558731 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 5434 27267175 ~ 27295337 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other downstream 143709 27405450 ~ 27490461 (+)
G139781 NA other downstream 166986 27428727 ~ 27429477 (+)
dbnlb dbnl other downstream 576504 27838245 ~ 27859702 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other downstream 757443 28019184 ~ 28027450 (+)

Expression


Co-expression Network