G139756


Basic Information

Item Value
gene id G139756
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27338993 ~ 27341506 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU165078
GCGTGCTACTGGTTTGTGTTTGACACTATCTAATGCGTCCTAGTGGACAGCTGGGAAGCGTGAAGAGTAACCCTAGCTCTTAGTGAGCACTGTGTGCTAGTTTAGTGACCCGGACTGGGGTAAGAAGATCTGCATCTGTGCAATCTGAGACTGGACAGAACGTCCCtgacttaaaaacaaaaagacattgTGCAGATCTATTATCTGTATCTCTGTAATGTAGCTGCTTTCAGAAGAAAGCTGAAAAGGTTTGTGGTTTTTACTGCATGTCTGTCAGTTTGGGTGTGTCCTCCTCGTCCTCGTCTTCCTGGGGACTGAATGCAGTTCTGCACTGTTATCAATAGGTGGTgacaaaaggttttttttcctaaatcaTTTCATCACTACACAAAGACTAAAGAATAATTGAACgtcaagtttttattttaacactaaACATAACATCATAgataatacacaaaatacaaaaaagagtTAGAAAGTGGCAGAAACATAATTgattggaataaaaaaaaaagaagcttaaATCCAACATATTTCACTCTAAAACAAGTGCTCGAATCATGACTCAATTCttcaatcctttttttttttaaaaaaaaaacacaattcaaAGCTACTAAAGCAAGAatagagagaaaagagtgtgtaagtgctaTAAATATCCATTAGAGAGCGCTCTAATCCAACAAAAGTGCTGAAGAAACTAGCACATCCTAcattcaaaaatgtaaatacatataatcataataataataatatataatagctTAAAAACAGCAAGTAAACATGATTTCACATACATGAGGATTAAATGAATGGTTTAGTGAAATTTTACACTCGATCAGCCGAGGCGATCCCCTGGcggtcccttttttttttttttgcttttttagtgGACATAAGTTGGTTATTtcttgtttcattaaaaataaagaagcatCTGGCTGATTGTGTAAAGAAATCTTTTTCTTAACCATTCATTTAACGTCACAAAATTGGTGAAGGctagcattattattaaaaataataatagcttAGCGTAAAAGAACAGATCGgccatgaaataaaatgtacatctCGTCCACTTTACCTCAAAACTGGTCAAGatgataagattttttttcattgggaAGTGTCTATGgtttgtttttatagttttgggtgctggagctacaaggctaataaCCTGCTTATAGCTAGCTGCTTGTAGGTTTAGCACTGTGCAAACTGCAGGTCTGTGAAATCACTTTACAAGACActtgctgttttaggaaaataatcaaccacaggGTGACGTGATGAAGTGGAACcccaaagtgatttattttcctataacagcgcgtcctggagtgttttattcctcttataccacagcaatttgccaacagctacaatttaaattttaagtttATTACAGAACGacgcatttacatttaatgtcgtggaacgtTCACAAAAGTTAGTGAAGAAGACTTTCCAGCgtctgaaaacttaaacttacagctttacctctggctgttacaaagcgctgacactggagactccttccacgaATGTTCAGTAAACATcgccttacagaaaacttcacatatcaaagattacacatttcctttttgctaaataactgcacatttcattttttaaatctgttttaaatgaatagcATTCGATTATGTGGGTGTCCCTGTTTAAGAtacgataatgtattaaaacgactgtgttaatataaacctgtgatttgctactgctgtagaaaattaatcaacatcttctgaccaatcagaatggagaattcagtaGCACCGTTGTATAATTATTCATGAATTAGGTCAACATTTAATTTACACTGAAACCCTTTTGTAATCTGAAACACTTCCAACTATTTCACATCCACAGCGTGCCGAGGAAGAGCGTGATTCGTCTAGACGATGAAGCTACAACTGGTTTTAGCTCTGCGGAAtcctttttcctccatttttatAGCTCACACTGTGTCTAAGAGTGTCGTAAACCACTTTCTCAAGCCTGTTTGAAAGTTTAACAACTCAGCAGACGAGTGTGGCGAGGTCTGAGGTGAACGCCATGATTTAGACACACAGTTTACACAATGCTAATCAactaaattaaagcaaaatctGGTCACCATCATGTCTTAGCCTATCAGCTTACATTCAAACTTTACACATTCACTTGccagagcaaaaaataaaaaatagaaaaaaaatttaaaaacccTGTTCAGCCCAGTGTGTCTGAAATGGAAAGCAGGTGTCTACCTTGTTTTCTAGCTCTAATCTAATGACTCggcagtttttttcttttttcttttctttttttttaataagctaaTACTGATGTATTCTTCTAATTAAGTAGGTTAATTCAATTGAAAACATTTTAGTGGTAAATAGTAGGCACTGCTAAGCTAAATGAAGAATATCACTGTGAATATAGATAGAAATATTCACCTCATGTTCTGTATAAATTTAGTGAAATATAAATAGAGATGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165078 True 2514 lncRNA 0.35 1 27338993 27341506

Neighbor

gene id symbol gene type direction distance location
ppiaa ppiaa,LOC108265559,LOC107691558,LOC107756846,LOC107722998,LOC107702873,LOC108411171,LOC107591938 coding upstream 825 27333371 ~ 27338168 (+)
ogdha ogdha,LOC108411168,LOC108265558,LOC107756845,LOC107691557,LOC107566960 coding upstream 7445 27297892 ~ 27331548 (+)
ccdc92 ccdc92 coding upstream 238243 27079096 ~ 27100750 (+)
ncor2 ncor2,LOC107753125,LOC107684513,LOC106585520 coding upstream 349411 26889333 ~ 26989582 (+)
ep400 ep400 coding upstream 482010 26819957 ~ 26856983 (+)
LOC113546107 slc18a1,LOC106527823,LOC107702874,LOC107591929 coding downstream 5875 27347381 ~ 27360862 (+)
tti2 tti2 coding downstream 22017 27363523 ~ 27370047 (+)
nr5a1a LOC108266031 coding downstream 169197 27510703 ~ 27530908 (+)
fgf17 fgf17,LOC107698084,LOC107678395,LOC103025711,LOC107721084,LOC106585328 coding downstream 240302 27581808 ~ 27588404 (+)
tubb2b tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding downstream 256908 27598414 ~ 27601456 (+)
G139686 NA non-coding upstream 230115 27106929 ~ 27108878 (+)
G139647 NA non-coding upstream 439576 26878636 ~ 26899417 (+)
G139653 NA non-coding upstream 444463 26891077 ~ 26894530 (+)
G139551 NA non-coding upstream 819511 26512892 ~ 26519482 (+)
G139235 LOC108265343 non-coding upstream 1302860 26032594 ~ 26036133 (+)
G139807 NA non-coding downstream 218884 27560390 ~ 27569085 (+)
LOC113546137 NA non-coding downstream 262411 27603917 ~ 27610560 (+)
G140170 NA non-coding downstream 269441 27610947 ~ 27611335 (+)
G140236 NA non-coding downstream 430938 27772444 ~ 27773644 (+)
G140237 NA non-coding downstream 433231 27774737 ~ 27851332 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other upstream 43656 27267175 ~ 27295337 (+)
fam160b2 LOC108265858 other upstream 77252 27183021 ~ 27261741 (+)
rimbp2 rimbp2,LOC108414005 other upstream 609047 26626053 ~ 26729946 (+)
LOC117597788 NA other upstream 771061 26562820 ~ 26567932 (+)
car15 LOC108264895 other upstream 876672 26400191 ~ 26462321 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other downstream 63944 27405450 ~ 27490461 (+)
G139781 NA other downstream 87221 27428727 ~ 27429477 (+)
dbnlb dbnl other downstream 496739 27838245 ~ 27859702 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other downstream 677678 28019184 ~ 28027450 (+)
slc7a4 slc7a4 other downstream 1407328 28748834 ~ 28803174 (+)

Expression


Co-expression Network