G139781


Basic Information

Item Value
gene id G139781
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27428727 ~ 27429477 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU165116
GTCGAGGGGGATGGGACAGGGCCGGGAGGCACAACGTATGTGTGTACGTGTCTGTgctgtattagtgtgtgtgcgagagacaAATgcaaagaaggagagagagaaagagagagaaggagagagaaggagagagagaaagagagagagagggatggctTTGTGTTGGCCCACTGGAGATCGGATGCTCATTGTGGGACCGGCGAGCGAGCGGCACGAATCAGCGCCTGAGCTTTattcacagacagagagagaaagaggaaagaacagaacagtgaggcaaaaaaacagacagataaacataaacagctgatgaacacacacaatatgttcTGTTAAAAAGATGGACTGCACACATGCGCGACTTTTTTGCGTGACCCAACAAGACTGTACACGTCCCACATATCTGAGCGTGCCCCGTAAAGAAGCACGCAGTCAGACACGTTCTCCGGAGATAATCCTCATGACGCTCCCGATCAATCAGAGATAAGGACGAGAGAATGTGAGGGCGAAACGATACATCGAGATCACACACGATGTCCGATACAGACGTATCACGATACTTCAGCAAAACTACACGGCCTAGTGCAGCTCCATGCCCAACATTTTTAACCATCAAGCGAAGACGAGGCATTTGAGAGTGTGTGACGAGGCAATACTCCTTACTGCGTCTAAAAGCGatagtgtgtgtaaatatcactCTGAAAGTGTTTATGggaagaaatgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165116 True 725 TUCP 0.48 2 27428727 27429477

Neighbor

gene id symbol gene type direction distance location
tti2 tti2 coding upstream 58680 27363523 ~ 27370047 (+)
LOC113546107 slc18a1,LOC106527823,LOC107702874,LOC107591929 coding upstream 67865 27347381 ~ 27360862 (+)
ppiaa ppiaa,LOC108265559,LOC107691558,LOC107756846,LOC107722998,LOC107702873,LOC108411171,LOC107591938 coding upstream 90559 27333371 ~ 27338168 (+)
ogdha ogdha,LOC108411168,LOC108265558,LOC107756845,LOC107691557,LOC107566960 coding upstream 97179 27297892 ~ 27331548 (+)
ccdc92 ccdc92 coding upstream 327977 27079096 ~ 27100750 (+)
nr5a1a LOC108266031 coding downstream 81226 27510703 ~ 27530908 (+)
fgf17 fgf17,LOC107698084,LOC107678395,LOC103025711,LOC107721084,LOC106585328 coding downstream 152331 27581808 ~ 27588404 (+)
tubb2b tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding downstream 168937 27598414 ~ 27601456 (+)
fkbp15b LOC108265163 coding downstream 249438 27678915 ~ 27698868 (+)
ube2d4 ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720 coding downstream 393060 27822537 ~ 27831378 (+)
G139756 NA non-coding upstream 87221 27338993 ~ 27341506 (+)
G139686 NA non-coding upstream 319849 27106929 ~ 27108878 (+)
G139647 NA non-coding upstream 529310 26878636 ~ 26899417 (+)
G139653 NA non-coding upstream 534197 26891077 ~ 26894530 (+)
G139551 NA non-coding upstream 909245 26512892 ~ 26519482 (+)
G139807 NA non-coding downstream 130913 27560390 ~ 27569085 (+)
LOC113546137 NA non-coding downstream 174440 27603917 ~ 27610560 (+)
G140170 NA non-coding downstream 181470 27610947 ~ 27611335 (+)
G140236 NA non-coding downstream 342967 27772444 ~ 27773644 (+)
G140237 NA non-coding downstream 345260 27774737 ~ 27851332 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other upstream 133390 27267175 ~ 27295337 (+)
fam160b2 LOC108265858 other upstream 166986 27183021 ~ 27261741 (+)
rimbp2 rimbp2,LOC108414005 other upstream 698781 26626053 ~ 26729946 (+)
LOC117597788 NA other upstream 860795 26562820 ~ 26567932 (+)
car15 LOC108264895 other upstream 966406 26400191 ~ 26462321 (+)
dbnlb dbnl other downstream 408768 27838245 ~ 27859702 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other downstream 589707 28019184 ~ 28027450 (+)
slc7a4 slc7a4 other downstream 1319357 28748834 ~ 28803174 (+)
LOC117597881 LOC108265326 other downstream 1896457 29325934 ~ 29351762 (+)
LOC113546008 LOC108264940,LOC108412050 other downstream 2430711 29860188 ~ 29876280 (+)

Expression


Co-expression Network