G140328


Basic Information

Item Value
gene id G140328
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28171588 ~ 28171793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU165781
ctatagagactgtaaAAGAGACTGTGGAGTCTATAATAGAGACCATAatatagagtgtaatagagacTGTAGAGTCTGTAGACTGTGGAGTCTGTAATAGAGACTGTAGAGTCTGTAGTAAACTATAGAGCCTATAatatagagtgtaatagagacTATAGATTCTGTAATAAACTATAGAGACTATAATATAGAGTGTAGTAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165781 True 206 lncRNA 0.33 1 28171588 28171793

Neighbor

gene id symbol gene type direction distance location
LOC113546156 NA coding upstream 61490 28103189 ~ 28110098 (+)
si:ch211-158d24.2 LOC108265298 coding upstream 80795 28054188 ~ 28090793 (+)
LOC117597849 NA coding upstream 156300 28005083 ~ 28015288 (+)
olfml2a olfml2a,olm2a coding upstream 188505 27954282 ~ 27983083 (+)
polr3d polr3d coding upstream 238359 27926636 ~ 27933229 (+)
si:dkeyp-14d3.1 tmem132c coding downstream 25063 28196856 ~ 28413159 (+)
glt1d1 glt1d1 coding downstream 296626 28468419 ~ 28495033 (+)
sf3a1 sf3a1,LOC107564451,LOC107550953 coding downstream 981753 29153546 ~ 29164988 (+)
pold2 pold2,LOC107747204 coding downstream 995687 29167480 ~ 29178413 (+)
bag4 bag4,LOC107702866,LOC107548251,LOC103396927 coding downstream 1135218 29307011 ~ 29313313 (+)
G140318 NA non-coding upstream 15677 28155708 ~ 28155911 (+)
G140311 NA non-coding upstream 34756 28136611 ~ 28136832 (+)
G140307 NA non-coding upstream 46777 28124606 ~ 28124811 (+)
G140244 NA non-coding upstream 229501 27930723 ~ 27942087 (+)
G140240 NA non-coding upstream 235770 27931210 ~ 27935818 (+)
G140574 slc15a4,LOC107564463,LOC107712031,LOC107576090 non-coding downstream 247327 28419120 ~ 28434435 (+)
G140748 NA non-coding downstream 343777 28515570 ~ 28516680 (+)
G140754 LOC108265443 non-coding downstream 405752 28577545 ~ 28744414 (+)
G140759 LOC108265444 non-coding downstream 411101 28582894 ~ 28748455 (+)
G140755 NA non-coding downstream 460095 28631888 ~ 28743837 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other upstream 144138 28019184 ~ 28027450 (+)
dbnlb dbnl other upstream 311886 27838245 ~ 27859702 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other upstream 681127 27405450 ~ 27490461 (+)
G139781 NA other upstream 742111 27428727 ~ 27429477 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other upstream 876251 27267175 ~ 27295337 (+)
slc7a4 slc7a4 other downstream 577041 28748834 ~ 28803174 (+)
LOC117597881 LOC108265326 other downstream 1154141 29325934 ~ 29351762 (+)
LOC113546008 LOC108264940,LOC108412050 other downstream 1688395 29860188 ~ 29876280 (+)
LOC113546064 hps4 other downstream 1731720 29903513 ~ 29929070 (+)
G141234 hps4 other downstream 1738236 29910029 ~ 29929154 (+)

Expression


Co-expression Network