G140574 (slc15a4,LOC107564463,LOC107712031,LOC107576090)


Basic Information

Item Value
gene id G140574
gene name slc15a4,LOC107564463,LOC107712031,LOC107576090
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 28419120 ~ 28434435 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU166087
AGAGAAGCTAGATGTCAGTCACACAGCAGAaataaagtacaataaaaaaatgcacaaaattcttaaaatgaattcaaaatgaattataaaaacatctgagtgcaaaacacatgaacaaacaaaaatgtgtctTAAAGTGTGTCAGAGTGTCAACAGTCAATGATTTCTCAGTATGAATAAACTCCATCCAGTTTTATACAACTTTAAACTCTGACCTCTTAACAAGTCGACTAGTagaaacacacaaatcacaGTGCAGATATAAAGCCTGATTCCTAAAGACGACAAAATCACATTAAAGCCGTCATCCTCGCTACCACGCCACACTGAACACGTAAACGCCTCGATGAGGAGCTAATGAGCCGAATCAGGTGTGTTCCAGCAGGTACATGCTGAACGCTGATCTAGTGCAGTACTGAAGAGACACGACAGTGCAATCAGGCATAAAACACAAAGtttaggctgctttcacactttttacCCAGTCCCAGCTAGTaccagctaactaactagcctagcttgctaTATACATTAGACTGATTACTGTCAGTCATATCGGACTGGTGGaactctggtgatgaggaggcTGTTTGGAGAGAATTTGATCTGCTCGTGTGACTTGACTGTATGCAGCTACGGTTAACGTGAGACGTCACATCACGTGCAACAACAGTGAACATCACACGTTAGTTTTACGCTAGAATATCAGCAAGGAAATAGTTTTCATTCAGCGTGTCGTAAATCTCCTcatattcactcactaacacGACTCATTTTTTATCGCCATTttctcctccatgtttgtttttctcgtCGAGTTCTCAGAGCttctcctgattggtcaggaagtCAAAAAGCGATTAGCGTCACTTTGAACTCTGATGGATGAAACGTAAAAgtttgtgggggaaaaaagtgtgaaagcagctttAGAAGGTTTTACTGAAACTTCACTGAAATTTATACCAAACAAGTGCATGTTACACACGTTTATACGtttatagcaaaaaaaacatcaaacgCACACAATGTCCAGATTTCCACCAGACACATCCAATCAGGCAAGACGTGTTTAACGACTGAGGTTTCCTTCCTGTAGCTAATTTTGAACCTTTTTAATTCTGTGTGCAGTTTGGTGCAGTCTGGATCATTGGTTTCAGTATGAGAATACGTAACGTTTGAAGCAGGTAGATAGAGATTTTTGGAGATATTTGCAGAAGATATATGGAGTAAAGAGGATGCTGtgatctttaaaaaatgttcttcattTAATTTGTAAAGGAAGCTGCTAAAGCACATGAAGCACATGAACATTCTCTCTCATTAAgatgaaacatgaaaatatttcactaaTGCTCTGTAAGCTCGCAGTCCTGAGACACAGGGAGGGCTAGAATATTCTCTTCATATTAAAGCCATCAGCTCTGCATgagagatgaaaatgaaatccAAAGACATGAGCAACAGGAAGCTGTTGATCTGAGATCCAAAACCAAAACTCCCAAATTTTAAATCTGACCTGGAGTCAGTTAGACGTGATTCTCTTTACGAAACGACTGAAGAGAGAAacgttaaatatataaataactgcaaGCAGGTAGTGTGGCACAGGCTGAGGCATGCTGGGAAAtccgcagtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgggtcaggaATTGAATGAAGACCTGTGGTTCACTTTGGGTCTCTGCTTATCATATTTGACCGAGACGATGAGGAACAGGAGGAGTGTGACGCCCTGAATACCGGCCAGGAGGAAGAAATAATAATTCAGCATGCAGTTGTTGatgtttccaAAGTCCTGGTGTGAGGACATCCAGCCGATGGGTTTGAGAGCAACGATGGCGAGCAGGCCGGAGCCCACGAATGAGCCGATaccagagaagaagaagaacagaccCATTATAGCACTTTGCATGGAGCGGGGAGCCGCCGAGTATGCAAACTCcaac

Function

symbol description
slc15a4 Predicted to enable symporter activity. Predicted to act upstream of or within oligopeptide transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; immature eye; nervous system; periderm; and yolk syncytial layer. Orthologous to several human genes including SLC15A4 (solute carrier family 15 member 4).

NR:

description
PREDICTED: solute carrier family 15 member 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166087 True 1979 lncRNA 0.41 2 28419120 28434435

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-14d3.1 tmem132c coding upstream 5961 28196856 ~ 28413159 (+)
LOC113546156 NA coding upstream 309022 28103189 ~ 28110098 (+)
si:ch211-158d24.2 LOC108265298 coding upstream 328327 28054188 ~ 28090793 (+)
LOC117597849 NA coding upstream 403832 28005083 ~ 28015288 (+)
olfml2a olfml2a,olm2a coding upstream 436037 27954282 ~ 27983083 (+)
glt1d1 glt1d1 coding downstream 33984 28468419 ~ 28495033 (+)
sf3a1 sf3a1,LOC107564451,LOC107550953 coding downstream 719111 29153546 ~ 29164988 (+)
pold2 pold2,LOC107747204 coding downstream 733045 29167480 ~ 29178413 (+)
bag4 bag4,LOC107702866,LOC107548251,LOC103396927 coding downstream 872576 29307011 ~ 29313313 (+)
LOC113546128 LOC108265329,LOC103021710,LOC108414840 coding downstream 881384 29315819 ~ 29318495 (+)
G140328 NA non-coding upstream 247327 28171588 ~ 28171793 (+)
G140318 NA non-coding upstream 263209 28155708 ~ 28155911 (+)
G140311 NA non-coding upstream 282288 28136611 ~ 28136832 (+)
G140307 NA non-coding upstream 294309 28124606 ~ 28124811 (+)
G140244 NA non-coding upstream 477033 27930723 ~ 27942087 (+)
G140748 NA non-coding downstream 81135 28515570 ~ 28516680 (+)
G140754 LOC108265443 non-coding downstream 143110 28577545 ~ 28744414 (+)
G140759 LOC108265444 non-coding downstream 148459 28582894 ~ 28748455 (+)
G140755 NA non-coding downstream 197453 28631888 ~ 28743837 (+)
G140765 NA non-coding downstream 203684 28638119 ~ 28639737 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other upstream 391670 28019184 ~ 28027450 (+)
dbnlb dbnl other upstream 559418 27838245 ~ 27859702 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other upstream 928659 27405450 ~ 27490461 (+)
G139781 NA other upstream 989643 27428727 ~ 27429477 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other upstream 1123783 27267175 ~ 27295337 (+)
slc7a4 slc7a4 other downstream 314399 28748834 ~ 28803174 (+)
LOC117597881 LOC108265326 other downstream 891499 29325934 ~ 29351762 (+)
LOC113546008 LOC108264940,LOC108412050 other downstream 1425753 29860188 ~ 29876280 (+)
LOC113546064 hps4 other downstream 1469078 29903513 ~ 29929070 (+)
G141234 hps4 other downstream 1475594 29910029 ~ 29929154 (+)

Expression


Co-expression Network