LOC113546008 (LOC108264940,LOC108412050)


Basic Information

Item Value
gene id LOC113546008
gene name LOC108264940,LOC108412050
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29860188 ~ 29876280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU166912
CTGAGCGTCTCACacttcactctttctctctctctctctctctctctctctttctgtctgtctgtctgtctctctgctcctgtctcatctctttttttttttttctaatcataCGCTAcgtatatatagatatatatattaactCCGTCACGTGAAGTGTGTATTTTGGACgttgtgtatgggtgtgtgtgcgtgtgtgtgtgtttcgtcaTGAGTCCTGGACTTTCACGATCCGAGGAGAAGGTGAAGGGTTCGATCGATGGCAGCGTGGATCAGAGTTTGGAGCGAGGAACTGACGGAGAAACTCCACCGCCGCTGAGAAATTACATCTTCCTGACTATTTTCACGTGTTTCTGTCCCGCGTGGCCCATCAACATCGTAGCGCTCGTGTTCTCTATGATGtctcagagCAGCTACGATAACAGGGATTATGATGGAGCTCACCGTTTGGGGAGAAAGGCTCTGCACATGGGCATCGCTTCTTTCATCATCGGCATACTCATAATTATGTCCTTCTGCATCGTACACTTCACTACGCACACCATCTGAGCACGCAGAAGAAGCTGTCCAGGAACAGTCGCAGCATGAGGTTCATCGTGACCTTTGATGGACTCGCAGGATAAAGCGGGATGTCTAGAGCCCCCTTATTGCTCAGATACGCCCCCTGCAGCactgtacagtgtttatggctaatctgtaatattttatacatttcaaagCAGTCCTAAGCTCTGGCAAGTGTAAACTCTGGTGCAGAAGCATGAGTGGGAaatcagatgtttattttatatgtgtTCATCATGTTATATAGCCTGCGTTAATTACAGTTAGCGTTAAATACACACTAGTACACGTCATCAAGTTCCTCCTACTGGCGAgctttttcttttgtctgtgtttatgcaacatgaataattaatacatttctgaaatgtatGAGATTGGAAAATCtggaaaagcaaaaacaaagaagatTGAATGAAAAAAGGCTAATTACATAAATTCGGTTTTCTTTAAAGGTGTTATTcgtattataaataaaacaaatgtacgTAGTTTCACCTTTACACCTCATACAGCCAATTAGCATTAAGCATTAtcttttaaattgattttatttattttaactccTATTTAACCATGATAGTCACATTGAGACACAAATCGCTTTTGCAAACGGATCCGTAATCCTTAAATATGGATTTTCGCTGCTGTGCTACAAAATAATTGGTTTTAAAAGGATATTACAGGTGAGGTTTGAAGTGAGTAGATGTAGACTGTGAGCGAGACAGACTTCTGTTACATGGAGTAAATTGTGAACCTTTAATTTCTCGTCTTATTGTTCCTTTAAATCACACAGTTTGTTATTGatcatgtttattatttcacactttttgtttaaaaaaacactgacagcaAATTTATGTTTGTACAGAAATTATTTGTCTGTgtgactgtgattttttttaaagaatatgtGCAacttatgtatttaaa
>XM_026945697.2
TATTCACTTTCACTCCAACACCCTTGGAGGTAATTAAGCCGTATCCCGTCTCCGGCTCACTCCGCTTCTTCTCCTGAGCGTCTCACacttcactctttctctctctctctctctctctctctctttctgtctgtctgtctgtctctctgctcctgtctcatctctttttttttttttctaatcataCGCTAcgtatatatagatatatatattaactCCGTCACGTGAAGTGTGTATTTTGGACgttgtgtatgggtgtgtgtgcgtgtgtgtgtgtttcgtcaTGAGTCCTGGACTTTCACGATCCGAGGAGAAGGTGAAGGGTTCGATCGATGGCAGCGTGGATCAGAGTTTGGAGCGAGGAACTGACGGAGAAACTCCACCGCCGCTGAGAAATTACATCTTCCTGACTATTTTCACGTGTTTCTGTCCCGCGTGGCCCATCAACATCGTAGCGCTCGTGTTCTCTATGATGtctcagagCAGCTACGATAACAGGGATTATGATGGAGCTCACCGTTTGGGGAGAAAGGCTCTGCACATGGGCATCGCTTCTTTCATCATCGGCATACTCATAATTATGTCCTTCTGCATCGTACACTTCACTACGCACACCATCTGAGCACGCAGAAGAAGCTGTCCAGGAACAGTCGCAGCATGAGGTTCATCGTGACCTTTGATGGACTCGCAGGATAAAGCGGGATGTCTAGAGCCCCCTTATTGCTCAGATACGCCCCCTGCAGCactgtacagtgtttatggctaatctgtaatattttatacatttcaaagCAGTCCTAAGCTCTGGCAAGTGTAAACTCTGGTGCAGAAGCATGAGTGGGAaatcagatgtttattttatatgtgtTCATCATGTTATATAGCCTGCGTTAATTACAGTTAGCGTTAAATACACACTAGTACACGTCATCAAGTTCCTCCTACTGGCGAgctttttcttttgtctgtgtttatgcaacatgaataattaatacatttctgaaatgtatGAGATTGGAAAATCtggaaaagcaaaaacaaagaagatTGAATGAAAAAAGGCTAATTACATAAATTCGGTTTTCTTTAAAGGTGTTATTcgtattataaataaaacaaatgtacgTAGTTTCACCTTTACACCTCATACAGCCAATTAGCATTAAGCATTAtcttttaaattgattttatttattttaactccTATTTAACCATGATAGTCACATTGAGACACAAATCGCTTTTGCAAACGGATCCGTAATCCTTAAATATGGATTTTCGCTGCTGTGCTACAAAATAATTGGTTTTAAAAGGATATTACAGGTGAGGTTTGAAGTGAGTAGATGTAGACTGTGAGCGAGACAGACTTCTGTTACATGGAGTAAATTGTGAACCTTTAATTTCTCGTCTTATTGTTCCTTTAAATCACACAGTTTGTTATTGatcatgtttattatttcacactttttgtttaaaaaaacactgacagcaAATTTATGTTTGTACAGAAATTATTTGTCTGTgtgactgtgattttttttaaagaatatgtGCAacttatgtatttaaataaataaataaata

Function

NR:

description
PREDICTED: transmembrane protein 233-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166912 False 1497 TUCP 0.39 3 29860261 29876266
XM_026945697.2 True 1584 mRNA 0.39 3 29860188 29876280

Neighbor

gene id symbol gene type direction distance location
msi1b msi1,LOC107687968,LOC107712472 coding upstream 15718 29820503 ~ 29844470 (+)
lzts1 LOC108264908 coding upstream 60244 29788461 ~ 29799944 (+)
gfra2a LOC108264921 coding upstream 164157 29624140 ~ 29696031 (+)
dok2 LOC108265492 coding upstream 359516 29491293 ~ 29500672 (+)
trnar-ucg_4 NA coding upstream 370001 29490115 ~ 29490187 (+)
prkab1b aakb1 coding downstream 2079 29878359 ~ 29887355 (+)
LOC113546087 LOC108264941,LOC108412053 coding downstream 23177 29899457 ~ 29903243 (+)
LOC117597833 hps4 coding downstream 33697 29909977 ~ 29910952 (+)
LOC113546086 NA coding downstream 53969 29930249 ~ 29932961 (+)
hnf1a hnf1a,LOC108412048 coding downstream 56686 29932966 ~ 29946606 (+)
G140943 NA non-coding upstream 355316 29503683 ~ 29504872 (+)
G140935 NA non-coding upstream 438894 29420880 ~ 29421294 (+)
G140910 NA non-coding upstream 562391 29297050 ~ 29297797 (+)
G140884 NA non-coding upstream 613872 29239482 ~ 29246316 (+)
G140830 NA non-coding upstream 693982 29158731 ~ 29166206 (+)
G141242 NA non-coding downstream 43452 29919732 ~ 29937740 (+)
G141247 NA non-coding downstream 61228 29937508 ~ 29954068 (+)
G141235 NA non-coding downstream 73578 29949858 ~ 29968041 (+)
G141236 asphd2 non-coding downstream 88487 29964767 ~ 30022919 (+)
G141324 NA non-coding downstream 166562 30042842 ~ 30043393 (+)
LOC117597881 LOC108265326 other upstream 508426 29325934 ~ 29351762 (+)
slc7a4 slc7a4 other upstream 1057014 28748834 ~ 28803174 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other upstream 1832738 28019184 ~ 28027450 (+)
dbnlb dbnl other upstream 2000486 27838245 ~ 27859702 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other upstream 2369727 27405450 ~ 27490461 (+)
LOC113546064 hps4 other downstream 27233 29903513 ~ 29929070 (+)
G141234 hps4 other downstream 33749 29910029 ~ 29929154 (+)
ggt5a LOC108264907 other downstream 152581 30028861 ~ 30040856 (+)

Expression


Co-expression Network