Gene
RNA
| Item | Value |
|---|---|
| gene id | G141324 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 30042842 ~ 30043393 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0046980 | tapasin binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU167047 | True | 552 | lncRNA | 0.40 | 1 | 30042842 | 30043393 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hnf1a | hnf1a,LOC108412048 | coding | upstream | 96236 | 29932966 ~ 29946606 (+) |
| LOC113546086 | NA | coding | upstream | 109881 | 29930249 ~ 29932961 (+) |
| LOC117597833 | hps4 | coding | upstream | 131890 | 29909977 ~ 29910952 (+) |
| LOC113546087 | LOC108264941,LOC108412053 | coding | upstream | 139599 | 29899457 ~ 29903243 (+) |
| prkab1b | aakb1 | coding | upstream | 155487 | 29878359 ~ 29887355 (+) |
| lrrc75ba | lrrc75ba,LOC108264915,LOC108414797,LOC107753104 | coding | downstream | 67404 | 30110797 ~ 30131740 (+) |
| LOC113546114 | NA | coding | downstream | 90543 | 30133936 ~ 30160538 (+) |
| rnf34a | LOC108264913 | coding | downstream | 134089 | 30177482 ~ 30181554 (+) |
| orai1a | orai1,LOC108414442,LOC106585507 | coding | downstream | 163115 | 30206508 ~ 30213445 (+) |
| LOC113523739 | LOC108263642,LOC108270747,LOC108273691,LOC108270753,LOC108261292,LOC108274210,LOC108257668,LOC108261406,LOC108273546 | coding | downstream | 272435 | 30315828 ~ 30322195 (+) |
| G141236 | asphd2 | non-coding | upstream | 19923 | 29964767 ~ 30022919 (+) |
| G141235 | NA | non-coding | upstream | 74801 | 29949858 ~ 29968041 (+) |
| G141247 | NA | non-coding | upstream | 88774 | 29937508 ~ 29954068 (+) |
| G141242 | NA | non-coding | upstream | 105102 | 29919732 ~ 29937740 (+) |
| G140943 | NA | non-coding | upstream | 537970 | 29503683 ~ 29504872 (+) |
| G141328 | NA | non-coding | downstream | 533 | 30043926 ~ 30098842 (+) |
| G141348 | NA | non-coding | downstream | 121000 | 30164393 ~ 30164991 (+) |
| G141366 | NA | non-coding | downstream | 128260 | 30171653 ~ 30172003 (+) |
| G141367 | NA | non-coding | downstream | 146074 | 30189467 ~ 30202765 (+) |
| G141375 | NA | non-coding | downstream | 170392 | 30213785 ~ 30214376 (+) |
| ggt5a | LOC108264907 | other | upstream | 1986 | 30028861 ~ 30040856 (+) |
| G141234 | hps4 | other | upstream | 113688 | 29910029 ~ 29929154 (+) |
| LOC113546064 | hps4 | other | upstream | 113772 | 29903513 ~ 29929070 (+) |
| LOC113546008 | LOC108264940,LOC108412050 | other | upstream | 166562 | 29860188 ~ 29876280 (+) |
| LOC117597881 | LOC108265326 | other | upstream | 691080 | 29325934 ~ 29351762 (+) |
