G141328


Basic Information

Item Value
gene id G141328
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 30043926 ~ 30098842 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU167053
gttttatttcttttatacacTTATTTccaacacacaatacacaaagtTAAGTGggctaaaatgaaaaatacagcatTCAGAAGGAACGTACGGAGCTGTGATATTGATACAGATGACTTAGCtacaaattaaatcaaacattGAATTGAAGAAGCAACACAATCCATCTTTGCATCCACAAGTTCATCTTTTAATCTGTGTCTTCCATCACATAGTATAGTAATAGTTAAATACAAACAGTATATGTAGGCAGATTATCTGTGTATTGAAAGCTTTGTAATGATCTGTGTGATTCATTCAGATTTGCGtaaatttctttgttttaacaAAGCTGTACAGATAAAAGTTGATTATTGTTATAGTTTGTTTCAGTAGCCGACAGCATATCCTCCTTTCCTCTGGTCTGATACAGCACAGATCAGATCATCCTGCCTCACCACGGCCTGAACCAACGAAGTGGTATTCTGCAACGGTGTGTTGTGCTTCTTCTGTTCTAGTCCCTTTTTCACACTctgtaaattaaatatagagtaaattattattattgttagtgcacaagagaagaaaagagtCATGTGTTTGATATAATGATGCTCAGTGACTTGGATATGAATCCTATTCCCGTGGAAGAGATGAAAGATTCAGCAGTTGATTCATAAACGAATTGTACTCTTATTTAAACAACTCTTTCACATGAATCAGGTGAATCGTAGTGTTGTATTTATCACTGTGTTGTTATGGATGAACATCAGgatacatttttatatgaatCAAATTGAGTTGCATCCTGCTGCATGTATTCAAGTGGCACCTGATCGAAGTTCTTTTCCACCTCAGTTTTGTTGGAGTTGAGCTGGTTGTGGAATCTGGGTTCCTCTACAGCTCTCTTCACATCGTAGTTAAAGAACAGAGAGTTCAGGATCACCTG
>TU167055
CATTATCACAGTTTATCCACATATATATAATCTTATGTGGCTCTGAAACAAACATGAATAATTAGATAAAAATCTGTTACCTGGTTGGATGAAGTTATTAGGTGAAGGAGGAACGTTGTATGCATTTGTGATGTGCGGAGAACTGAAGTCGTCCATCATATTGTTAAAGATGATTCCAGTGGAACGTGACATCACTTTAGAACCAAAACTGCACAGAAACACCATCAGGACTTTATACActcagtacggtgtgttctgattggctgagagcagtacagcaTGTTCAGTCTTACTATTGGTTGATGCTGCTGGTCACAGCCACGGCGCTCCCATCCTCAGcgatgatggacagatgagcCGTTCCGTAACTCTCAGGGTTAAAGTATTCTGGATCATAGTAACTCTCTGGCTGCATGCTGTCATCTGAGATCTTACTGCGGATGTTATTGGCAAAGTAGTCCGAGGTCATGTTGTGGATGAGctgaagagtgagagagagaatgacaaaCATCATAGAATGACAAATTCAGATGATGTGGCTCAAATGAGTCCTCTGGCTAATTGTATGGTCCAGTGTTTCTTCATTTCCCCACTCACAAATTTAGTTCCTGTAGTTCATCTTATCTTGTCACATGCGTATAggtacagtgcattcagaaagtattcagaccccttcatttttttcattttgttattattgtaatttcatctgattcttaaaaaataaaacgatGTTTTTTACCCCAAAGGTACTCAATTGGCCAAAACGTTTCATTTCAtatcacatttcacattatttacatttgatttaaatgaaaaaacaaacacaattcatcattctgttaattagctgctgatttttgtcttttttttttttttcaaacaaaaagttGTATTTGGTCTcgatgtattttatttctcttatacacTTATTTccaacacacaatacacaaagtTAAGTGggctaaaatgaaaaatacagcatTCCGAAGGAATGTACGGAGCTGTGATATTGATACAGATGACTTGGCtacaaattaaatcaaacattGAATTGAAGAAGCAACACAATCCACAAGTTCATCTTTTAATCTGTGTCTTCCATCACATAGTATAGTAATAGTTAAATACAAACAGTATATGTAGGCAGATTATCTGTGTATTGAAAGCTTTGTAATGATCTGTGTGATTCATTCAGATTTGCGtaaatttctttgttttaacaaAGCTGTACAGATAAAAGTTGATTATTGTTAAAGTTTGTTTCAGTAGCCGACAGCATATCCTCCTTTCCTGTGGTCTGATTCAGCACAGATCAGATCATCCTGCCTCACCACGGCCTGAACCACTGAAGTGGTATTCTGCAACAAAGTCACGTGATTCTTCTGTTCTAGTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167053 False 928 lncRNA 0.36 2 30043926 30075520
TU167055 True 1398 lncRNA 0.37 3 30049968 30098842

Neighbor

gene id symbol gene type direction distance location
hnf1a hnf1a,LOC108412048 coding upstream 97320 29932966 ~ 29946606 (+)
LOC113546086 NA coding upstream 110965 29930249 ~ 29932961 (+)
LOC117597833 hps4 coding upstream 132974 29909977 ~ 29910952 (+)
LOC113546087 LOC108264941,LOC108412053 coding upstream 140683 29899457 ~ 29903243 (+)
prkab1b aakb1 coding upstream 156571 29878359 ~ 29887355 (+)
lrrc75ba lrrc75ba,LOC108264915,LOC108414797,LOC107753104 coding downstream 11955 30110797 ~ 30131740 (+)
LOC113546114 NA coding downstream 35094 30133936 ~ 30160538 (+)
rnf34a LOC108264913 coding downstream 78640 30177482 ~ 30181554 (+)
orai1a orai1,LOC108414442,LOC106585507 coding downstream 107666 30206508 ~ 30213445 (+)
LOC113523739 LOC108263642,LOC108270747,LOC108273691,LOC108270753,LOC108261292,LOC108274210,LOC108257668,LOC108261406,LOC108273546 coding downstream 216986 30315828 ~ 30322195 (+)
G141324 NA non-coding upstream 533 30042842 ~ 30043393 (+)
G141236 asphd2 non-coding upstream 21007 29964767 ~ 30022919 (+)
G141235 NA non-coding upstream 75885 29949858 ~ 29968041 (+)
G141247 NA non-coding upstream 89858 29937508 ~ 29954068 (+)
G141242 NA non-coding upstream 106186 29919732 ~ 29937740 (+)
G141348 NA non-coding downstream 65551 30164393 ~ 30164991 (+)
G141366 NA non-coding downstream 72811 30171653 ~ 30172003 (+)
G141367 NA non-coding downstream 90625 30189467 ~ 30202765 (+)
G141375 NA non-coding downstream 114943 30213785 ~ 30214376 (+)
G141350 NA non-coding downstream 115644 30214486 ~ 30214821 (+)
ggt5a LOC108264907 other upstream 3070 30028861 ~ 30040856 (+)
G141234 hps4 other upstream 114772 29910029 ~ 29929154 (+)
LOC113546064 hps4 other upstream 114856 29903513 ~ 29929070 (+)
LOC113546008 LOC108264940,LOC108412050 other upstream 167646 29860188 ~ 29876280 (+)
LOC117597881 LOC108265326 other upstream 692164 29325934 ~ 29351762 (+)

Expression


Co-expression Network