G141375


Basic Information

Item Value
gene id G141375
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 30213785 ~ 30214376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU167121
GAAAGATTTTTACGCATTCATGCTAATTAGCaatccaataaaataaaaaaactcatGCGAATCAGCTAAGCAAAAACTTGCTAATCATGCTAATTATCTGtttgaatatttttgaaattcATGCTAATGCGCTAACCAAAAGTAACCACAGggtttttataaaaacattgcatttgcttttttgtgccttatttttatatattttattttatttagtttttttgccACAGTGCTGCTACTAATGGGTCCGAGTTTTATCGCTAAAAACCGAAACTAGCCGCTAAATTAGCCGGTGATGCTAACGAGTTCAAGATGATTACGGTAAAAAGCGACGTGGatgaaataaacagtaaaatgataAAGAAACTAAAACACAGTGTTTAATGAAACAGTgttaatttaaacttttataataatttcattctGTTCATGAACTTTAACCTTAACTGCAATTTTATAGAATGTGATTTAcgattaatttaaaataagcgatttttattaatcatataaacacacatatacacatgcactcatacacacacaaactctcacacacacacacacacacacacacaaacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167121 True 592 lncRNA 0.31 1 30213785 30214376

Neighbor

gene id symbol gene type direction distance location
orai1a orai1,LOC108414442,LOC106585507 coding upstream 340 30206508 ~ 30213445 (+)
rnf34a LOC108264913 coding upstream 32231 30177482 ~ 30181554 (+)
LOC113546114 NA coding upstream 53247 30133936 ~ 30160538 (+)
lrrc75ba lrrc75ba,LOC108264915,LOC108414797,LOC107753104 coding upstream 82045 30110797 ~ 30131740 (+)
hnf1a hnf1a,LOC108412048 coding upstream 267179 29932966 ~ 29946606 (+)
LOC113523739 LOC108263642,LOC108270747,LOC108273691,LOC108270753,LOC108261292,LOC108274210,LOC108257668,LOC108261406,LOC108273546 coding downstream 101452 30315828 ~ 30322195 (+)
selenop LOC108264920,LOC108264932 coding downstream 163237 30377613 ~ 30382370 (+)
G141367 NA non-coding upstream 11020 30189467 ~ 30202765 (+)
G141366 NA non-coding upstream 41782 30171653 ~ 30172003 (+)
G141348 NA non-coding upstream 48794 30164393 ~ 30164991 (+)
G141328 NA non-coding upstream 114943 30043926 ~ 30098842 (+)
G141324 NA non-coding upstream 170392 30042842 ~ 30043393 (+)
G141350 NA non-coding downstream 110 30214486 ~ 30214821 (+)
G141349 NA non-coding downstream 542 30214918 ~ 30215730 (+)
G141377 NA non-coding downstream 6345 30220721 ~ 30220947 (+)
G141454 NA non-coding downstream 68764 30283140 ~ 30283339 (+)
G141462 NA non-coding downstream 119402 30333778 ~ 30374533 (+)
ggt5a LOC108264907 other upstream 172929 30028861 ~ 30040856 (+)
G141234 hps4 other upstream 284631 29910029 ~ 29929154 (+)
LOC113546064 hps4 other upstream 284715 29903513 ~ 29929070 (+)
LOC113546008 LOC108264940,LOC108412050 other upstream 337505 29860188 ~ 29876280 (+)
LOC117597881 LOC108265326 other upstream 862023 29325934 ~ 29351762 (+)

Expression


Co-expression Network