dclre1b (dclre1b)


Basic Information

Item Value
gene id dclre1b
gene name dclre1b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12792216 ~ 12798367 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911429.2
GACTGCATCAGCCAAcgggaaatgttttttttttttcaaatcagttACATGCATAGCGAGGTGATGTATTTAGTGCTGCATCGGGATTATGGTTTGATTTAAAGAAGGCAGTGAAATGATAACCGGATGCTTTAGCCATTAGATTGTGAATTGCAGCTAGCTAGTAACAGACAAAGCTGGATGTTCACCGTACTGCACtgctagctaagctagctagcatactAGCACATCTGACCGCTTAGCATTTTTCTGTCTCCTGTCTCAGAAGTGTGGTACTAAGAATACTTTATATTCTAATGCGTCCCacatttctgcctttttttttgtaaatttgtaaataagtACATGGAATAGCATCACTCTTAGCTTTTGCTAACTACAGCTAATGAGAAATGGTTCTTGTTGACTAGCCGAAAGGCATTATGTATTCATTGGCGTGTAAAGTTCATATCTTACTATGGCAACGCTAGAGaggttgatattttttttacagtcagtGAGATAACTAaatggctgctgctgctgctgctgtaaatgCTTGAGTAAGTGCTCTCTGCTTAGCAGGACAGACTTGCCCTGTTGAAACTCTTGAGGTTTTCCCAGTAGCAGAGGTAATATGAATGGTAAAGTCATTCCTCACACCCCCATAGCTGTGGACTGCTGGCAGCTTCGAAAGTGCAGCCACGTCCGGCTTTTCTTCctctcacacatgcactcaGATCACACATCAGGCCTCACATCCACCTGGAGCCATCGACCCATATACTGCTCTCCTCTCACTGCCAAGCTCCTCAGACTCAAACTGCAGGTGAATGAAAAATGGATCCGGCCTCTGGAGGTTGGGGAGCCACACATGTTGCCCCTGGATGACATTGGGAAGGAAAAATTGACCGTTACCCTTATTGATGCCAATCACTGTCCTGGggctgttatgttttttttcgaGGGCTACTTTGGCACTATTCTTTACACCGGTGACTTTCGGTACACTCCATCAATGCTGCGTGAGCCGTGTCTTAGGAATAATACCACTATTGATGTGCTTTATTTGGACAACACTAACTGTGACCCCACACGTTCAATTCCTACTCGCCAGCGAGCCTGTCAGCAGATGAAGGAGATCATACGAGGCCATCCAAACTACACTGTGGTCATCGGCATGTATGCTCTGGGGAAAGAGTCTCTGCTCGTACAGTTGGCGCTGGAGTTTAAGACCTGGGTGGAGGTAGATGTGGAGCGTCTGGAGACCCTACGGGTGCTGGAGCTGCCTGATGTGTTCAGCACAGAGCCAGGCTCGGGGCGGCTCCGTGCCGTTGCTCAGTCCGAGGTCACTGCGTCCAACCTGCTGGCCTGGAATAAGGAGCGGCCTACCATCGCCATACTGCCCACCAGCCGCCCTGTGGTCTCCTGCCACCCTAACGTCCATGTCGTGCCCTACTCAGACCACTCCTCCTACCAGGAGCTGGAGGACTTTGTTTCAGCTTTGCGTCCTGTGTCACTGGTGCCGATTGTGGGCAGCTGCATGCCGAACTTCTCTCTTCTATGCCAACGCAGGAAGCGACATGAGGTGGTGATACCCGAGTCAGTACAGCACTACATGAGGGCAAAACCTAATGTTCAGCCTTTTACTTTCAGAAGAAACTTTCTTCATCGTTCTTTGCACACAGTGCCTCGAGGGGTTGTGTTCGAATCACCTGGAAAGAGTCCCAGACTCCCTAGccataatgatgatgaagattcAGATGCTATGGAGGCAGAAGATGATGTAGCAGAAGTCGATTCTGAACTGGATGGAGACTCCGATTGCATTCTGTTAGACATGAGCACAGACCTCACACATGACAAGAGTCTAAATCTGATTCGGATTACATCAGAGGATGCAACTACAATTGACAGTTTCCCTCTAGACGAGACTGATTCCCTCATTGCCCTTGAAGGATCAAGGTCACCTAATATTAATAGCACAAGCAAAACCACAGCTTCACCCTGTGATAGTGTTACGGCAGTGACCCATAACAAAAATCCCAGGAAGAGGAGCCCCCAAACGGGAATCATTAACTCCAGAGTGATGTGTTCATCAATGGACAGCATTAGTCTCCATGACAGCAGCTGTGTAATGGCTTTAGCAGCTTTAACACCATCTGAAACACATCCTGATTCATCTGATGCATTTGATACAGtcgagagagagaagacagagcaGTGGCTACTCAACAACTTCACTATTCCAGAGGAAGAATTCGCATGTCAATACGGAGTCATTCAAGGTCTGCACGAGGTGTATCCACTCACGCCAATCAATATGCCAAAAGCTGAGGGTGATCCATTTGAGGCTGCAATACAGAGATTCAAATCCAAATAGGTATCTAAAACATTTAGGACATTCAAAAACCAAGACATATACTGTTCATCATCATTACAAGTAACAGAAAAGGTCAAATAGTGaataagatattaatagtgaaaaatgAAGTTGAAAAGTCTCCTTGTTTGAATGTGATGTAAATGTATTCTAATACTTATACTCACTGTTTGCCTTCTTCGAATCAGATCTGAAGAAAGCTAGGGTGGCAGAACTTCTTTCTTCTGCCTTAATCTAAGCCTTTGTGTTGATTTGCCACAATAATAACCACTACACTCTCTAAAGCTCTCCAATACAACTTGCTTAATATACAACAATTTTTTACATGTAGTGTTAAAAACTCTTCTCTGGTGTGTTCAGTATTTTTCAGCTTATTATGGTGTAGCATAATGTAGCACTGTTTTAGACCATGTTCTTTCCTACTGCAACATCATGTTTCGAGTTCTTACTGTACATCAAACTAAATCCATTATGTGTCTTGTTATTGTGCCTAGGTGGGTGTTAACTGATTGTCTTTTCAACAGTATGGAAACCATTAAGGTATTAAAATGTtaagaatgaaaataatttttcactTTTGCCACTTTATATGTTAGTTATATAGTTTTGAAATTGTACACAGAACGTTTTTGCAAAAACCTCAAATGGAAGTGTAATAAAAGGTCAGAAGGTACAAAAGGTCTTA
>XM_034307046.1
TGGTCACTGCGAGGAATGCCATGCTGCAACATAAATATCGGATATTATCTGGTAATTCGTTTAGATTGaagataataaagaaatatgatttaaaatataGGCTAGTTGTGCTACAATGTGAGCTGATTATCAATGGAGAAGCTGTGGACTGCTGGCAGCTTCGAAAGTGCAGCCACGTCCGGCTTTTCTTCctctcacacatgcactcaGATCACACATCAGGCCTCACATCCACCTGGAGCCATCGACCCATATACTGCTCTCCTCTCACTGCCAAGCTCCTCAGACTCAAACTGCAGGTGAATGAAAAATGGATCCGGCCTCTGGAGGTTGGGGAGCCACACATGTTGCCCCTGGATGACATTGGGAAGGAAAAATTGACCGTTACCCTTATTGATGCCAATCACTGTCCTGGggctgttatgttttttttcgaGGGCTACTTTGGCACTATTCTTTACACCGGTGACTTTCGGTACACTCCATCAATGCTGCGTGAGCCGTGTCTTAGGAATAATACCACTATTGATGTGCTTTATTTGGACAACACTAACTGTGACCCCACACGTTCAATTCCTACTCGCCAGCGAGCCTGTCAGCAGATGAAGGAGATCATACGAGGCCATCCAAACTACACTGTGGTCATCGGCATGTATGCTCTGGGGAAAGAGTCTCTGCTCGTACAGTTGGCGCTGGAGTTTAAGACCTGGGTGGAGGTAGATGTGGAGCGTCTGGAGACCCTACGGGTGCTGGAGCTGCCTGATGTGTTCAGCACAGAGCCAGGCTCGGGGCGGCTCCGTGCCGTTGCTCAGTCCGAGGTCACTGCGTCCAACCTGCTGGCCTGGAATAAGGAGCGGCCTACCATCGCCATACTGCCCACCAGCCGCCCTGTGGTCTCCTGCCACCCTAACGTCCATGTCGTGCCCTACTCAGACCACTCCTCCTACCAGGAGCTGGAGGACTTTGTTTCAGCTTTGCGTCCTGTGTCACTGGTGCCGATTGTGGGCAGCTGCATGCCGAACTTCTCTCTTCTATGCCAACGCAGGAAGCGACATGAGGTGGTGATACCCGAGTCAGTACAGCACTACATGAGGGCAAAACCTAATGTTCAGCCTTTTACTTTCAGAAGAAACTTTCTTCATCGTTCTTTGCACACAGTGCCTCGAGGGGTTGTGTTCGAATCACCTGGAAAGAGTCCCAGACTCCCTAGccataatgatgatgaagattcAGATGCTATGGAGGCAGAAGATGATGTAGCAGAAGTCGATTCTGAACTGGATGGAGACTCCGATTGCATTCTGTTAGACATGAGCACAGACCTCACACATGACAAGAGTCTAAATCTGATTCGGATTACATCAGAGGATGCAACTACAATTGACAGTTTCCCTCTAGACGAGACTGATTCCCTCATTGCCCTTGAAGGATCAAGGTCACCTAATATTAATAGCACAAGCAAAACCACAGCTTCACCCTGTGATAGTGTTACGGCAGTGACCCATAACAAAAATCCCAGGAAGAGGAGCCCCCAAACGGGAATCATTAACTCCAGAGTGATGTGTTCATCAATGGACAGCATTAGTCTCCATGACAGCAGCTGTGTAATGGCTTTAGCAGCTTTAACACCATCTGAAACACATCCTGATTCATCTGATGCATTTGATACAGtcgagagagagaagacagagcaGTGGCTACTCAACAACTTCACTATTCCAGAGGAAGAATTCGCATGTCAATACGGAGTCATTCAAGGTCTGCACGAGGTGTATCCACTCACGCCAATCAATATGCCAAAAGCTGAGGGTGATCCATTTGAGGCTGCAATACAGAGATTCAAATCCAAATAGGTATCTAAAACATTTAGGACATTCAAAAACCAAGACATATACTGTTCATCATCATTACAAGTAACAGAAAAGGTCAAATAGTGaataagatattaatagtgaaaaatgAAGTTGAAAAGTCTCCTTGTTTGAATGTGATGTAAATGTATTCTAATACTTATACTCACTGTTTGCCTTCTTCGAATCAGATCTGAAGAAAGCTAGGGTGGCAGAACTTCTTTCTTCTGCCTTAATCTAAGCCTTTGTGTTGATTTGCCACAATAATAACCACTACACTCTCTAAAGCTCTCCAATACAACTTGCTTAATATACAACAATTTTTTACATGTAGTGTTAAAAACTCTTCTCTGGTGTGTTCAGTATTTTTCAGCTTATTATGGTGTAGCATAATGTAGCACTGTTTTAGACCATGTTCTTTCCTACTGCAACATCATGTTTCGAGTTCTTACTGTACATCAAACTAAATCCATTATGTGTCTTGTTATTGTGCCTAGGTGGGTGTTAACTGATTGTCTTTTCAACAGTATGGAAACCATTAAGGTATTAAAATGTtaagaatgaaaataatttttcactTTTGCCACTTTATATGTTAGTTATATAGTTTTGAAATTGTACACAGAACGTTTTTGCAAAAACCTCAAATGGAAGTGTAATAAAAGGTCAGAAGGTACAAAAGGTCTTA
>XM_034307047.1
GACTGCATCAGCCAAcgggaaatgttttttttttttcaaatcagttACATGCATAGCGAGGTGATGTATTTAGTGCTGCATCGGGATTATGGTTTGATTTAAAGAAGGCAGTGAAATGATAACCGGATGCTTTAGCCATTAGATTGTGAATTGCAGCTAGCTAGTAACAGACAAAGCTGGATGTTCACCGTACTGCACtgctagctaagctagctagcatactAGCACATCTGACCGCTTAGCATTTTTCTGTCTCCTGTCTCAGAAGTGTGGTACTAAGAATACTTTATATTCTAATGCGTCCCacatttctgcctttttttttgtaaatttgtaaataagtACATGGAATAGCATCACTCTTAGCTTTTGCTAACTACAGCTAATGAGAAATGGTTCTTGTTGACTAGCCGAAAGGCATTATGTATTCATTGGCGTGTAAAGTTCATATCTTACTATGGCAACGCTAGAGaggttgatattttttttacagtcagtGAGATAACTAaatggctgctgctgctgctgctgtaaatgCTTGACTGTGGACTGCTGGCAGCTTCGAAAGTGCAGCCACGTCCGGCTTTTCTTCctctcacacatgcactcaGATCACACATCAGGCCTCACATCCACCTGGAGCCATCGACCCATATACTGCTCTCCTCTCACTGCCAAGCTCCTCAGACTCAAACTGCAGGTGAATGAAAAATGGATCCGGCCTCTGGAGGTTGGGGAGCCACACATGTTGCCCCTGGATGACATTGGGAAGGAAAAATTGACCGTTACCCTTATTGATGCCAATCACTGTCCTGGggctgttatgttttttttcgaGGGCTACTTTGGCACTATTCTTTACACCGGTGACTTTCGGTACACTCCATCAATGCTGCGTGAGCCGTGTCTTAGGAATAATACCACTATTGATGTGCTTTATTTGGACAACACTAACTGTGACCCCACACGTTCAATTCCTACTCGCCAGCGAGCCTGTCAGCAGATGAAGGAGATCATACGAGGCCATCCAAACTACACTGTGGTCATCGGCATGTATGCTCTGGGGAAAGAGTCTCTGCTCGTACAGTTGGCGCTGGAGTTTAAGACCTGGGTGGAGGTAGATGTGGAGCGTCTGGAGACCCTACGGGTGCTGGAGCTGCCTGATGTGTTCAGCACAGAGCCAGGCTCGGGGCGGCTCCGTGCCGTTGCTCAGTCCGAGGTCACTGCGTCCAACCTGCTGGCCTGGAATAAGGAGCGGCCTACCATCGCCATACTGCCCACCAGCCGCCCTGTGGTCTCCTGCCACCCTAACGTCCATGTCGTGCCCTACTCAGACCACTCCTCCTACCAGGAGCTGGAGGACTTTGTTTCAGCTTTGCGTCCTGTGTCACTGGTGCCGATTGTGGGCAGCTGCATGCCGAACTTCTCTCTTCTATGCCAACGCAGGAAGCGACATGAGGTGGTGATACCCGAGTCAGTACAGCACTACATGAGGGCAAAACCTAATGTTCAGCCTTTTACTTTCAGAAGAAACTTTCTTCATCGTTCTTTGCACACAGTGCCTCGAGGGGTTGTGTTCGAATCACCTGGAAAGAGTCCCAGACTCCCTAGccataatgatgatgaagattcAGATGCTATGGAGGCAGAAGATGATGTAGCAGAAGTCGATTCTGAACTGGATGGAGACTCCGATTGCATTCTGTTAGACATGAGCACAGACCTCACACATGACAAGAGTCTAAATCTGATTCGGATTACATCAGAGGATGCAACTACAATTGACAGTTTCCCTCTAGACGAGACTGATTCCCTCATTGCCCTTGAAGGATCAAGGTCACCTAATATTAATAGCACAAGCAAAACCACAGCTTCACCCTGTGATAGTGTTACGGCAGTGACCCATAACAAAAATCCCAGGAAGAGGAGCCCCCAAACGGGAATCATTAACTCCAGAGTGATGTGTTCATCAATGGACAGCATTAGTCTCCATGACAGCAGCTGTGTAATGGCTTTAGCAGCTTTAACACCATCTGAAACACATCCTGATTCATCTGATGCATTTGATACAGtcgagagagagaagacagagcaGTGGCTACTCAACAACTTCACTATTCCAGAGGAAGAATTCGCATGTCAATACGGAGTCATTCAAGGTCTGCACGAGGTGTATCCACTCACGCCAATCAATATGCCAAAAGCTGAGGGTGATCCATTTGAGGCTGCAATACAGAGATTCAAATCCAAATAGGTATCTAAAACATTTAGGACATTCAAAAACCAAGACATATACTGTTCATCATCATTACAAGTAACAGAAAAGGTCAAATAGTGaataagatattaatagtgaaaaatgAAGTTGAAAAGTCTCCTTGTTTGAATGTGATGTAAATGTATTCTAATACTTATACTCACTGTTTGCCTTCTTCGAATCAGATCTGAAGAAAGCTAGGGTGGCAGAACTTCTTTCTTCTGCCTTAATCTAAGCCTTTGTGTTGATTTGCCACAATAATAACCACTACACTCTCTAAAGCTCTCCAATACAACTTGCTTAATATACAACAATTTTTTACATGTAGTGTTAAAAACTCTTCTCTGGTGTGTTCAGTATTTTTCAGCTTATTATGGTGTAGCATAATGTAGCACTGTTTTAGACCATGTTCTTTCCTACTGCAACATCATGTTTCGAGTTCTTACTGTACATCAAACTAAATCCATTATGTGTCTTGTTATTGTGCCTAGGTGGGTGTTAACTGATTGTCTTTTCAACAGTATGGAAACCATTAAGGTATTAAAATGTtaagaatgaaaataatttttcactTTTGCCACTTTATATGTTAGTTATATAGTTTTGAAATTGTACACAGAACGTTTTTGCAAAAACCTCAAATGGAAGTGTAATAAAAGGTCAGAAGGTACAAAAGGTCTTA

Function

symbol description
dclre1b Predicted to enable 5'-3' exodeoxyribonuclease activity and damaged DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in centrosome and chromosome, telomeric region. Orthologous to human DCLRE1B (DNA cross-link repair 1B).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0031848 protection from non-homologous end joining at telomere biological_process
GO:0031860 telomeric 3' overhang formation biological_process
GO:0031627 telomeric loop formation biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005813 centrosome cellular_component
GO:0008409 5'-3' exonuclease activity molecular_function

KEGG:

id description
K15341 DCLRE1B, SNM1B; DNA cross-link repair 1B protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911429.2 True 3047 mRNA 0.44 4 12792450 12798367
XM_034307046.1 False 2538 mRNA 0.44 5 12792216 12798367
XM_034307047.1 False 2939 mRNA 0.44 5 12792450 12798367

Neighbor

gene id symbol gene type direction distance location
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding upstream 9059 12775926 ~ 12783157 (+)
LOC113531715 LOC108265567,LOC108414659 coding upstream 130071 12659028 ~ 12662145 (+)
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding upstream 137533 12651225 ~ 12654683 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 coding upstream 143109 12646689 ~ 12649107 (+)
alx3 alx3 coding upstream 194777 12586799 ~ 12597439 (+)
lhfpl5b lhfpl5,LOC107591869,LOC107745833,LOC102777996 coding downstream 118071 12916438 ~ 12921186 (+)
c8h1orf194 c5h1orf194 coding downstream 179660 12978027 ~ 12979366 (+)
inavaa LOC108264883 coding downstream 187060 12985427 ~ 12994779 (+)
LOC113534124 NA coding downstream 257083 13055450 ~ 13061438 (+)
trnav-cac_9 NA coding downstream 263569 13061936 ~ 13062008 (+)
G131605 NA non-coding upstream 62694 12712625 ~ 12729522 (+)
G131606 NA non-coding upstream 79731 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding upstream 90715 12700712 ~ 12701501 (+)
LOC117597859 NA non-coding upstream 258958 12519894 ~ 12533258 (+)
G131282 NA non-coding upstream 565854 12226152 ~ 12226362 (+)
LOC117597782 NA non-coding downstream 10756 12809123 ~ 12809738 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding downstream 138937 12937304 ~ 12941456 (+)
G131721 NA non-coding downstream 205028 13003395 ~ 13006090 (+)
G131715 LOC108265908,LOC108442391 non-coding downstream 223849 13022216 ~ 13023846 (+)
G131930 NA non-coding downstream 475768 13274135 ~ 13275095 (+)
rbm15 rbm15,LOC107731203 other upstream 187511 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 562215 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 796364 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1078184 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1095425 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 906799 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1092037 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1151570 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1523805 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 2141934 14940301 ~ 14982884 (+)

Expression


Co-expression Network