LOC113525715 (ski,LOC108265356,LOC107599811,LOC106937962)


Basic Information

Item Value
gene id LOC113525715
gene name ski,LOC108265356,LOC107599811,LOC106937962
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 515310 ~ 534999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912303.2
ATGTCGATGGAAAATGCTGTCGATTGCCAACTCAAGTGGTTTTTGataaagtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgttttcagggtTTTAACTGCATTCAGCCGCGACAGAGAGTGTCCGCGTTCAGGCCCTGGTCCCCGAACATCACCGAAAAGGACGGAGCCACAAAAGCAGCTAGCGTGCCACGGGACAGtttttatAACTATAAGTCTCTGGAGAACTCGGTGGCTCCGAACGTGGCTCTGCCTCCGATGCAGAAGGGGGCGCCGGCGTCGCTGTCGGTCCTGAGCGGCGCGAGCCGCGGCGAGGAGCGCACCGAGGGACACGGGAAGACCAGGAAGAGGAGGATAACCGGCGAGGGTCACCCAGGACACGCCCCCTCCGGCCACGCCCAGCAAAGCCACGCCCTATCTCGAGCACCTCCACCAATGACGGAGGAGCGAGACTCGGACGTGGAGGTCGAGGTTCGAGATGAAGTGACCTCCTCGCTGTCGTCCCTCTCGTCTCCTTCGTTCACGTCCTCCAGCTCCGCTAAGGAGCTCAGCTCTCCCGGAGTCGCAGGGGTCACGGGGGTCGCCGAGGTCACCGCGGGGTCGGGGTCGGGGTCCGGGGCGGAGAGCCAGGTGGGCGGAGCTTCTGTGGACTCGGAGCTGGACACCCTGAGACAGGCGCTGGACGGAGGAATGGAGTCGCGCGAGTCGAAGGAGAAACTCCTGCACGAGATCCTGAAGATGAGGGTGAAGCAGGAGGAGAAGCTGGGCTCGGCTCTGCAGGCCAAACGCAGCCTGCAGCAGgAGCTGGAGTTCCTGCGTGTGGTGAAGAAGGAGAAGCTGCGTGAGGCGAGTGAAGCTAAGCGCGCTCTGCGTAAGGAGATGGAGCGACTGCGAGCCGAGAACGAGAGGAAGATGAAGGAAGCGAACGAGACTCGAGCTCGACTCAGCAGAGAGCTGGAGGAGGCCAAGCAGCTGCGCAAGTGCGACAAAGGCTGCGAGTCAGCGCGCATGCGCTCCAAGTACtctgctcagatcgAGGAGCTGCAGATGAAGCTCCAGCTGGCCGAGGCAGATCGTGAGCAGCTCCGCTCTGAGCTCCAGCAGGAACGTGAAGCTCGTCAGCACCTCGAGAGGGTCGTCAAAGATCTACAGGATCAGCTGTGGCCCAAACCCgaggaggaaacacacacagagctgagcGGGAAAACTCCATCAGCTTCATCTGCTTCAAACGCTAAAGAGTCCgacaattaacacacactctgtctgtagacacacacacacacacacacatgcagtaatCATGAGGAGCACGAGGAGAGAGACGCTGTACAGTGACTGAAGACGTtgaaatgaaaaagatgaagaagaaagacGGATGTGTAAAATGGAAGAAGACACTTAAGTGGAAAATCGGAAGTGTGTGTTACGGATGTGAGCAGAGACTCGCGCTTCCTCGTCAGCTCCCGGGATGCACTGATCCTGACTCGGAATTTCTGACGTCGAGATGAACACAGGACACGAAATGTTTCATATCACACTTCAACTTTTTAATCACGGTTTACAGAAAGAGCACGATGTTGTATTTGTAAAATTCTGTGCAAAGCGATGCCTatgttagcatttttaaaaaattacaccGTGCCCGTTTGCTAGCGTGTTTACGGTAAACCTGCTACTCCTGGAATTACGGTAATGTGGTGTGACAGATGGGATCAGTGCATCGCTGTGAAACTTTATATCATATCACAGTAAATATAAACACGGTTGATATTAAAAACATAAGCACAAACATATTcttgtgcttaagactttttaaaaaaaaaaaaaaacagaggcttttatacacatttaaaatcgATTCTTTACACGAGGAAGAAACTTCGGAGACGAATAATTCTCGTCATCTCTTCGTTAACCGttaagaaagtgtgtgtttttacactcTCCTCTTTTTGTAACAGACTATTTATCAGACGAGTTAcgatacaaaaacaaaaatttcttttttgaaaattttttcAAAGAAATCGTATCTCTGTGTCGCTTGCTATCGTTGCTATTACATCATTtcttaataaacacacacacacacacacacacttgtacctGAGCGCGTTTGGGTCAAAACCTCGTAAGTGTATCTTAAAAAGatagttgagtgtgtgtgtgtgtgtgtgtgtgagacgctaACAGCTTCACTGTGCATATCCACCGTTGCGACGCTAACAGTTAGCATCATGCTAAATCATGGCGCCATGTTTTTTCAGAgggctgttttaaaaaaaaaaaagcgacaGAATGTTCTTTTAAgtaaattatatgtaaatatgaatgtttttttcctttttttaactttacaatAATGAATCGCACTTTGTCATAACGAGATCCTGCgtaaaaaaatgcattagcCTCTCTGTACCTTTATTTCAGAGTTTAGCCTCCAGgagtatagaaaataaaaaaaataaataataaataataataataataaaaagcattatGTTGATTATATGCAACACAGTTACATGCAATGTAATCCTATGTTTAAGGcagaaatattgtaaataaacatttcagaacAAAAAAGAGGGTCTTTATGCTCTGCTTTGCTGAAACACTTCTCTAAACAAactcaaattaattttttttttttaattttatttctacagtCGGTCCAGAAGTGTGAGAgctgtttattcttttcttattttatcaGCTATTAAACTCAAATAACATTCAACATTGTGCCGGTAATCAACAATAAGAAATTAAAGCTAGCTTTGTTTCCGTTATCTTTGTTcagtaagctagctagcattatgcTGAACTACACTGACTTAACAaactcagctagctagctaagctatctatctatctatgttaTTAAATATAGCGATAtatt

Function

symbol description
ski Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; enzyme binding activity; and zinc ion binding activity. Involved in several processes, including SMAD protein signal transduction; negative regulation of osteoblast differentiation; and negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Acts upstream of or within negative regulation of Schwann cell proliferation. Located in PML body and centrosome. Part of protein-containing complex.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: ski oncogene-like

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0051216 cartilage development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046332 SMAD binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912303.2 True 2950 mRNA 0.46 6 515310 534999

Neighbor

gene id symbol gene type direction distance location
tnfsf10 tnfsf10,LOC108261837,LOC107663625,LOC107590350 coding upstream 21198 490445 ~ 494112 (+)
LOC113541233 nceh1 coding upstream 37263 467761 ~ 478047 (+)
prkcz LOC108265357,LOC108415018,LOC108250564 coding upstream 59222 410989 ~ 456088 (+)
tnni3k tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 coding upstream 148529 342662 ~ 366781 (+)
fpgt fpgt coding upstream 174224 334903 ~ 341086 (+)
spag17 NA coding downstream 191793 726792 ~ 758536 (+)
LOC117597816 LOC108265208 coding downstream 224302 759301 ~ 777486 (+)
slc5a5 slc5a5 coding downstream 405543 940542 ~ 960999 (+)
jak3 jak3 coding downstream 430499 965498 ~ 994785 (+)
LOC113535335 NA coding downstream 711531 1246530 ~ 1255935 (+)
G124520 NA non-coding upstream 11518 503448 ~ 503792 (+)
G124517 NA non-coding upstream 25236 489867 ~ 490074 (+)
G124511 NA non-coding upstream 48851 461512 ~ 466459 (+)
G124512 NA non-coding upstream 50341 463579 ~ 464969 (+)
G124506 NA non-coding upstream 78337 436162 ~ 436973 (+)
G124553 NA non-coding downstream 152107 687106 ~ 692246 (+)
G124556 NA non-coding downstream 156008 691007 ~ 727883 (+)
G124643 NA non-coding downstream 387620 922619 ~ 923124 (+)
G124874 NA non-coding downstream 459853 994852 ~ 995170 (+)
G124895 NA non-coding downstream 529602 1064601 ~ 1065080 (+)
si:ch73-70k4.1 LOC108265358 other upstream 6400 507064 ~ 508910 (+)
G124498 NA other upstream 107876 399756 ~ 407434 (+)
G124462 NA other upstream 184911 272417 ~ 330399 (+)
G124442 NA other upstream 336893 177662 ~ 178417 (+)
G124403 NA other upstream 429227 70073 ~ 86083 (+)
cept1a LOC108265319 other downstream 70860 605859 ~ 658563 (+)
G124541 cept1a,LOC108265319 other downstream 110967 645966 ~ 647953 (+)
G124565 NA other downstream 169590 704589 ~ 705857 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other downstream 242965 777964 ~ 821367 (+)
lonrf1l lonrf1 other downstream 568716 1103715 ~ 1112067 (+)

Expression


Co-expression Network