si:dkey-70p6.1 (si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481)


Basic Information

Item Value
gene id si:dkey-70p6.1
gene name si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13464131 ~ 13489999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912780.2
CAGGACACACAGCAAGGTGCTGTTCCCCCAGCACAAATGAGCAGCAGTGAGTCAGCAAACTGGCAAGCTTTACGCGGCTCGGTCAGAAGCACAGCATGTGATGCAGCACAACAGGTGGCGCATTTAACGGAGCGTTCGAGCGCCGCGCTGCTGTCACACGCACAACCGAGAGACGGAGAGACGAGAAGGCTTTTTATCCTTCAGCCATCCAGAACTGAACTGCAGAACAAGTCGAGCTTTGCCTTGCCAAAGAGGAGCTGAAGCCAGACGCTAGAATAATGGCGGTGCGGAGAGAAGGCGGTGATGATGCGGATGTCGGTCGCCGCGGCGCGCGCCAGCTCTCTGTAATAACGCGCGCGGAGCACTGATTAATGCGCACGGGGCTGCGACCGCGAGTCCCAACAGTTCAGCCGCATACTGAGAGACAGCCAGAGAGCCAGAGAGGCCAACGCAGACCCCGGAACCCCTAACCTGAGGATTTTTAAAGATGGTTTTGCAGCCATGGTTACACGCTCAGTCCCGCTTGGCTGTTTGATGTGACATTCTATATCCTGTGAAGCGTATAGCCAgtttttgcctgtgtgtgtgcctgtggcAGAGAGTGGGAGTGTACGAGCGAGCGTGTGTGAGCACTCTCACATGGCCTCGATGCAGGACGGGGTGAACTTCACTGCTCCCCCCTACGGCAAAGTGTTGCTGCTCGGGGCCATCGCAGCTGCCTCGGCCTTCGTCGTCACCATCCTGATTGTCGTGCTGTGTGTGGGCTGCCACAGGAAGGGGAAGAGTCACAATGGTACTGGTGAAGAGAGAAAGCACAGACTCATGGACATGaacatatTGCGGCAGTCAAAGCTGCGCTCCATCAGTAAGTCAGACACCAAGCTCCATGAGATGAACAGACTCAACTGCAATGGCAAAAAATCCTCCAAGAAGAACCGTCCAGCCAGTATGGACCTGCTCCTGCTGCCAAGCCGTCGCTCCAATTCAGACCTGCGAACCTCACAAGGCCGCCAGGTGCCCCAGGTGCCGTCAGGGGAGGATGTAGAGCACACATACGCTGAGGTGGGGCGTCGCTCGTCCCCCACTCGCTGTCCTGAGGCCGCGCTCAGGGGGCGGGCTGGAGAGACAGACACCCCCGCCCCCCCAGCTGTTCCCGCCAATACCCCAGCCCCACCTGATCCGGATGGGGACAGCCTGGATGGCGGGATTCCTGAGCCTGAGACCCTCCCTCAGGTAATGAACCCGCCCCCGCAGCCTCCGGAAACAGCTGAGTATGCGTGTATCAGAAAAGTTCGCAAGGTTGACAAAGCTGCCCAGAAGAGGGATAATGGCACTGAGACGGAGGAGGGGCTCGGCCAGGCACAGCGGCACAGTAGTGGAGAGATTCGGCATGCTCCGCCCAGTCATCCAGCTCCGCCCCCACCACATCCGCACAGTCAAAAGTTGCCACGCAAGAATGTGGAGGCTTTCaatcttcctttctttccaaAGGAGGCAGTGTTTATTGGAAATGGAGAGGAGTACATATGGAAGCCTCCTGAAGATGATGACATCATGTTCCAGCCCAAGCACATAGGCCCTCTGAGCCCTCACATGGGAGAAAACATGGCAGCTGGGATCTCAGATATGTATTCTAAAGTCTGCAAACCAGGCAAGAAGAAAAGAGGCATGCCCGGCTCGCCTACTGGTCCTAGGGATATTGGTGGCTATCGGACCTTGGCCCGAGGTGAACGTGATGGTGGCTTTAATGTGGTGGTGAAGCCACAGACATGGGCGCCACAGGAGGCAAAAGGCTCAAGGATGCCCCCTGGCTCAATGGAAGAGCACTGCTACGAAGCCATTGGTGCGGAGGAGAGCGACATGTCCTATGAAGCTGCAGAggttggtggaggaggaggaggaggaggtggtggaggatGGAAACGAGACAGGCCTCCACCCAATGCCAGTGCCACTCTCCGGCCCAAGAAGAGAAAGCCACAGCAGCCACAGCACcaaccacctccaccacctcccCCTCCCCAGCATACGCCCAAGATGCAGCACCTGCCAGCCAAAGCACTTTTGCTGCCAGGCGAGAATCTCTACGAGAGCATCCCTGACCTTAAGCAGGGCTCAACCACATCCAGTACCACCACCATCTTCACTTTTAATGACGGAATGGAAATGTACGTCACTGGCCTGTAAGGGCTCAAACTTAAATCTCATATGGAAAGACCCCCCATCTTATAGTTGAGTGGGAAAGAGGCTTGATAAGGCAACAACTCTTCctgcactcattcacacatcaTGTTTACATTTCAGCCCTATGGTTCCCAAGTAGCCCCACACATTGCCTTAGAGAAGCAGTCTGGAAGAGGGGGCTTATCTTACAGAAGATATTGTGcaaaggttttcagtggggATGCTATTGCATCATACATCAGTTTGGTAAACACTCATTGCACTACCACTTCATGTCTAACATGGTGTATCAGTATTAATTGCCTATGGATTGGGATTTGAAAGTGTGGTGGGAAAAAAAGTGATAACACCAAGGAAAAGACTTAGGTAAAAACTTATCTCACTTAATCACATATCTTTCGAGAGTAGCAGACATCAGAATTCACAAATCACCAACAAATCACCACATAGGGGAAGCCTGTTTAAGGTATTCTCCAGAATCCTGTTTTTGATAGTACACTCACTTGTGCATTAGTTTCCATCTAAGTTTCCATCGGAATTGCgggtttcttttgtttaattttatgttaattccAAAGGAAAGGACAAAATGAGCACAACTCTACTGAGCAGAAAGAATACTAAAATGGCACAGAGTATTTACACTCAATGTTTTAGAGTATATTGACAGAGAAAAATTAtgcagtgggaaaaaaaagcccCTTATTTTAGTGACAAACCAATAGCAAAATATAACTATTAATGAAATTCTGGCTAAGGCCACTATTGTCATCCCTTGTATTGTAGCTTGACAATGAACACAGGCCTTtatctaaattatttattaatacatcCACAAGCTTTGGGAAAATATGTGGCACTATTTTTCTAGTGATAAAGCCTCtatttctgtaaggaaattctatgggaaataaatataaaatatagatataaaaacagtattcccaatcactgaatcacacaaCTGCATATTGGTCTGCATATTCAAAAGCACAGAATCATATAATGCAAATTTCCTCTTTCAGCACTTAAATACATTATAGACTGTTTTGAGTCCATTTGAAAAATGAGAGCTAAAATGAATTACATGATAATTATAGTAGCAATTAAAAAAGAGATCCTAAAAAGAATTAGCAAAAGCTcagggaaagtgaaaaatatataaaggtaATTGAATTAGTTGCACATGGAACTATTTTCCTCTAAGTGAAACAAAGAGAGTTTAGAGCATTTTAGGCATTGGACCTTGCCCTTCAGAATggttttttaatctttttgttttcataGTACTAACTTTTTTCGTTTTAGCTCATAACATAAACACTTAAATGGCTGTGTATGAAGTCACCACTGCcgtacaatacagtacaataatgTTTTACGTTGTTAATACTGTTAATGCACTTTGCCTGATAAAAAAAGAtgcatgtattaaaaaaaaacatacaaatgaaaaaaggtgatgaaaaaaaacaagttatcTGGTGTCTGAGAATGGTTTATTTCTTGCTGTTGTCGGTTGCTTATTTGATTTAATTGCCTTTTCCTCTGCTAAAGAGAGAGCACAATGTTTTGCTTCAAGACTGATGAATCAAGGTGAACTTTGTCTACATCTGACATTACACAACTGGAAGCAGAATGTGACTGGTCATAGTGAATAAATCATAGACAATTCTCCTCATTTCTCCAAGTGAACACCAATCAGGATGTCTGCATTTGGCTCAAACACCTTTTAGGCGGACATATGCTCTAGGTGGAATTTAGGTGGAATTTCACCCAACTGTCTTTCAGCACATTAATCTGCTGTATAATAATTGGGAATAATGTAAAGAAACACTCTATTGATGCTATTGAAATGATGGTAACCAGTGAGTATAGTGCGCTACAGTGGTTTTTATGGTTGTGGTTTTAATGCACACAGCATTATCTGTGACGTTCCTCaagaattgaagaaaaaaaaaaaacgagttaACCTTCACCAGTGAGAATTAATATTAGTGTAAAAAGAGGCTTGAACCCATGGAGAAAGACTGCAGTCTATGAGTCTGGCACACAGTCACTGTCATATATGTTGGAGCAACgttgtaaatattttacaagaaatgaaaagaacagGAGGATCAAGGTGAAGTTGCCCTAGGTGTATTTGAACATatgtgtttcttttcatttgttcttttgGAATGATTTTTCTCTGGTGAAAATTTTGCTCAGCAGTATCTCTGTGGGTTTTGATGTGTttcgttattttttttattcttttcccgTGCCATTTTGAGCTATTATGTGTATTTCAAAGATCAACTGAGTATTAGTGTGGCAGCTgatgttgtgtgtttgcttatCAGACAACAGGGTTGTGTGTTCCAGCCGTGTAAGTACTCATGTGCAAAAgattgtaatgtttttataacaaaatgACTATTCATAAAAAATGTCAACAAGTTTATACTTTTCTAATAAAGTAGCACCTAAAAACCTG
>XM_026912789.2
CAGGACACACAGCAAGGTGCTGTTCCCCCAGCACAAATGAGCAGCAGTGAGTCAGCAAACTGGCAAGCTTTACGCGGCTCGGTCAGAAGCACAGCATGTGATGCAGCACAACAGGTGGCGCATTTAACGGAGCGTTCGAGCGCCGCGCTGCTGTCACACGCACAACCGAGAGACGGAGAGACGAGAAGGCTTTTTATCCTTCAGCCATCCAGAACTGAACTGCAGAACAAGTCGAGCTTTGCCTTGCCAAAGAGGAGCTGAAGCCAGACGCTAGAATAATGGCGGTGCGGAGAGAAGGCGGTGATGATGCGGATGTCGGTCGCCGCGGCGCGCGCCAGCTCTCTGTAATAACGCGCGCGGAGCACTGATTAATGCGCACGGGGCTGCGACCGCGAGTCCCAACAGTTCAGCCGCATACTGAGAGACAGCCAGAGAGCCAGAGAGGCCAACGCAGACCCCGGAACCCCTAACCTGAGGATTTTTAAAGATGGTTTTGCAGCCATGGTTACACGCTCAGTCCCGCTTGGCTGTTTGATGTGACATTCTATATCCTGTGAAGCGTATAGCCAgtttttgcctgtgtgtgtgcctgtggcAGAGAGTGGGAGTGTACGAGCGAGCGTGTGTGAGCACTCTCACATGGCCTCGATGCAGGACGGGGTGAACTTCACTGCTCCCCCCTACGGCAAAGTGTTGCTGCTCGGGGCCATCGCAGCTGCCTCGGCCTTCGTCGTCACCATCCTGATTGTCGTGCTGTGTGTGGGCTGCCACAGGAAGGGGAAGAGTCACAATGGTACTGGTGAAGAGAGAAAGCACAGACTCATGGACATGaacatatTGCGGCAGTCAAAGCTGCGCTCCATCAAATCCTCCAAGAAGAACCGTCCAGCCAGTATGGACCTGCTCCTGCTGCCAAGCCGTCGCTCCAATTCAGACCTGCGAACCTCACAAGGCCGCCAGGTGCCCCAGGTGCCGTCAGGGGAGGATGTAGAGCACACATACGCTGAGGTGGGGCGTCGCTCGTCCCCCACTCGCTGTCCTGAGGCCGCGCTCAGGGGGCGGGCTGGAGAGACAGACACCCCCGCCCCCCCAGCTGTTCCCGCCAATACCCCAGCCCCACCTGATCCGGATGGGGACAGCCTGGATGGCGGGATTCCTGAGCCTGAGACCCTCCCTCAGGTAATGAACCCGCCCCCGCAGCCTCCGGAAACAGCTGAGTATGCGTGTATCAGAAAAGTTCGCAAGGTTGACAAAGCTGCCCAGAAGAGGGATAATGGCACTGAGACGGAGGAGGGGCTCGGCCAGGCACAGCGGCACAGTAGTGGAGAGATTCGGCATGCTCCGCCCAGTCATCCAGCTCCGCCCCCACCACATCCGCACAGTCAAAAGTTGCCACGCAAGAATGTGGAGGCTTTCaatcttcctttctttccaaAGGAGGCAGTGTTTATTGGAAATGGAGAGGAGTACATATGGAAGCCTCCTGAAGATGATGACATCATGTTCCAGCCCAAGCACATAGGCCCTCTGAGCCCTCACATGGGAGAAAACATGGCAGCTGGGATCTCAGATATGTATTCTAAAGTCTGCAAACCAGGCAAGAAGAAAAGAGGCATGCCCGGCTCGCCTACTGGTCCTAGGGATATTGGTGGCTATCGGACCTTGGCCCGAGGTGAACGTGATGGTGGCTTTAATGTGGTGGTGAAGCCACAGACATGGGCGCCACAGGAGGCAAAAGGCTCAAGGATGCCCCCTGGCTCAATGGAAGAGCACTGCTACGAAGCCATTGGTGCGGAGGAGAGCGACATGTCCTATGAAGCTGCAGAggttggtggaggaggaggaggaggaggtggtggaggatGGAAACGAGACAGGCCTCCACCCAATGCCAGTGCCACTCTCCGGCCCAAGAAGAGAAAGCCACAGCAGCCACAGCACcaaccacctccaccacctcccCCTCCCCAGCATACGCCCAAGATGCAGCACCTGCCAGCCAAAGCACTTTTGCTGCCAGGCGAGAATCTCTACGAGAGCATCCCTGACCTTAAGCAGGGCTCAACCACATCCAGTACCACCACCATCTTCACTTTTAATGACGGAATGGAAATGTACGTCACTGGCCTGTAAGGGCTCAAACTTAAATCTCATATGGAAAGACCCCCCATCTTATAGTTGAGTGGGAAAGAGGCTTGATAAGGCAACAACTCTTCctgcactcattcacacatcaTGTTTACATTTCAGCCCTATGGTTCCCAAGTAGCCCCACACATTGCCTTAGAGAAGCAGTCTGGAAGAGGGGGCTTATCTTACAGAAGATATTGTGcaaaggttttcagtggggATGCTATTGCATCATACATCAGTTTGGTAAACACTCATTGCACTACCACTTCATGTCTAACATGGTGTATCAGTATTAATTGCCTATGGATTGGGATTTGAAAGTGTGGTGGGAAAAAAAGTGATAACACCAAGGAAAAGACTTAGGTAAAAACTTATCTCACTTAATCACATATCTTTCGAGAGTAGCAGACATCAGAATTCACAAATCACCAACAAATCACCACATAGGGGAAGCCTGTTTAAGGTATTCTCCAGAATCCTGTTTTTGATAGTACACTCACTTGTGCATTAGTTTCCATCTAAGTTTCCATCGGAATTGCgggtttcttttgtttaattttatgttaattccAAAGGAAAGGACAAAATGAGCACAACTCTACTGAGCAGAAAGAATACTAAAATGGCACAGAGTATTTACACTCAATGTTTTAGAGTATATTGACAGAGAAAAATTAtgcagtgggaaaaaaaagcccCTTATTTTAGTGACAAACCAATAGCAAAATATAACTATTAATGAAATTCTGGCTAAGGCCACTATTGTCATCCCTTGTATTGTAGCTTGACAATGAACACAGGCCTTtatctaaattatttattaatacatcCACAAGCTTTGGGAAAATATGTGGCACTATTTTTCTAGTGATAAAGCCTCtatttctgtaaggaaattctatgggaaataaatataaaatatagatataaaaacagtattcccaatcactgaatcacacaaCTGCATATTGGTCTGCATATTCAAAAGCACAGAATCATATAATGCAAATTTCCTCTTTCAGCACTTAAATACATTATAGACTGTTTTGAGTCCATTTGAAAAATGAGAGCTAAAATGAATTACATGATAATTATAGTAGCAATTAAAAAAGAGATCCTAAAAAGAATTAGCAAAAGCTcagggaaagtgaaaaatatataaaggtaATTGAATTAGTTGCACATGGAACTATTTTCCTCTAAGTGAAACAAAGAGAGTTTAGAGCATTTTAGGCATTGGACCTTGCCCTTCAGAATggttttttaatctttttgttttcataGTACTAACTTTTTTCGTTTTAGCTCATAACATAAACACTTAAATGGCTGTGTATGAAGTCACCACTGCcgtacaatacagtacaataatgTTTTACGTTGTTAATACTGTTAATGCACTTTGCCTGATAAAAAAAGAtgcatgtattaaaaaaaaacatacaaatgaaaaaaggtgatgaaaaaaaacaagttatcTGGTGTCTGAGAATGGTTTATTTCTTGCTGTTGTCGGTTGCTTATTTGATTTAATTGCCTTTTCCTCTGCTAAAGAGAGAGCACAATGTTTTGCTTCAAGACTGATGAATCAAGGTGAACTTTGTCTACATCTGACATTACACAACTGGAAGCAGAATGTGACTGGTCATAGTGAATAAATCATAGACAATTCTCCTCATTTCTCCAAGTGAACACCAATCAGGATGTCTGCATTTGGCTCAAACACCTTTTAGGCGGACATATGCTCTAGGTGGAATTTAGGTGGAATTTCACCCAACTGTCTTTCAGCACATTAATCTGCTGTATAATAATTGGGAATAATGTAAAGAAACACTCTATTGATGCTATTGAAATGATGGTAACCAGTGAGTATAGTGCGCTACAGTGGTTTTTATGGTTGTGGTTTTAATGCACACAGCATTATCTGTGACGTTCCTCaagaattgaagaaaaaaaaaaaacgagttaACCTTCACCAGTGAGAATTAATATTAGTGTAAAAAGAGGCTTGAACCCATGGAGAAAGACTGCAGTCTATGAGTCTGGCACACAGTCACTGTCATATATGTTGGAGCAACgttgtaaatattttacaagaaatgaaaagaacagGAGGATCAAGGTGAAGTTGCCCTAGGTGTATTTGAACATatgtgtttcttttcatttgttcttttgGAATGATTTTTCTCTGGTGAAAATTTTGCTCAGCAGTATCTCTGTGGGTTTTGATGTGTttcgttattttttttattcttttcccgTGCCATTTTGAGCTATTATGTGTATTTCAAAGATCAACTGAGTATTAGTGTGGCAGCTgatgttgtgtgtttgcttatCAGACAACAGGGTTGTGTGTTCCAGCCGTGTAAGTACTCATGTGCAAAAgattgtaatgtttttataacaaaatgACTATTCATAAAAAATGTCAACAAGTTTATACTTTTCTAATAAAGTAGCACCTAAAAACCTG

Function

symbol description
si:dkey-70p6.1 Predicted to act upstream of or within antigen receptor-mediated signaling pathway; intracellular signal transduction; and negative regulation of T cell activation. Predicted to be located in membrane raft and plasma membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: basic salivary proline-rich protein 4 isoform X1

GO:

id name namespace
GO:0050852 T cell receptor signaling pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912780.2 True 4666 mRNA 0.45 9 13464131 13489999
XM_026912789.2 False 4612 mRNA 0.45 9 13464131 13489999

Neighbor

gene id symbol gene type direction distance location
tpd52l2a tpd52l2 coding upstream 77746 13372492 ~ 13386385 (+)
trnae-cuc_18 NA coding upstream 94512 13369548 ~ 13369619 (+)
nol4la nol4la,LOC108265968,LOC108412512,LOC103039117,LOC107550513,LOC107680239,LOC107745834,LOC107731219,LOC107549982 coding upstream 111528 13309890 ~ 13352603 (+)
gpr173 gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding upstream 238812 13214466 ~ 13225319 (+)
wasb was coding upstream 318924 13136689 ~ 13145207 (+)
emilin3a LOC108265066 coding downstream 33722 13523721 ~ 13541674 (+)
magixa LOC108265805,LOC108437579 coding downstream 126605 13616604 ~ 13688929 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding downstream 333099 13823098 ~ 13833297 (+)
csde1 csde1 coding downstream 348339 13838338 ~ 13868120 (+)
apex2 apex2 coding downstream 383547 13873546 ~ 13877960 (+)
G131947 NA non-coding upstream 24401 13437922 ~ 13439730 (+)
G131948 NA non-coding upstream 27173 13435501 ~ 13436958 (+)
G131987 NA non-coding upstream 28837 13433917 ~ 13435294 (+)
G131980 NA non-coding upstream 41917 13420705 ~ 13422214 (+)
G131972 NA non-coding upstream 63851 13392525 ~ 13400280 (+)
G132081 NA non-coding downstream 10390 13500389 ~ 13500683 (+)
G132115 NA non-coding downstream 80393 13570392 ~ 13570972 (+)
G132139 NA non-coding downstream 301863 13791862 ~ 13792709 (+)
G132136 NA non-coding downstream 303157 13793156 ~ 13794305 (+)
G132138 pdzd4,LOC108437581 non-coding downstream 304583 13794582 ~ 13799616 (+)
rbm15 rbm15,LOC107731203 other upstream 859426 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1234130 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1468279 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1750099 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1767340 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 215167 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 400405 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 459938 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 832173 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1450302 14940301 ~ 14982884 (+)

Expression


Co-expression Network