rap1aa (rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206)


Basic Information

Item Value
gene id rap1aa
gene name rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9624300 ~ 9637023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913306.2
TGTGTGCTACTCGGGTCACAGTGTCTACGCCGTTGCCCTTTTAAGGACGCTGTGGGAAGCAGGAGAATGACGTTTACAGGCGCGAGCTCGGAGTCGCTGCTCTCAGCGCCAGGCGGAGCGGCGAGAAACAACGCACGGCTGTAGAGGTGTGTGCCGAGAGACCCCAGCATGCGTGAATATAAGCTTGTGGTCTTGGGCTCGGGAGGTGTGGGGAAATCTGCACTGACAGTGCAGTTTGTTCAGGGAATATTTGTGGAAAAATATGACCCCACAATAGAAGACTCATATAGGAAGcAAGTAGAAGTGGATGGGCAGCAATGCATGCTAGAAATCCTTGACACAGCCGGCACAGAGCAGTTTACAGCGATGAGGGATCTGTATATGAAGAACGGACAGGGCTTCGCTCTGGTCTATTCCATCACAGCACAGTCCACCTTTAACGACCTTCAAGACCTGAGGGAACAGATCTTAAGAGTCAAAGACACAGAGGATGTGCCAATGATTCTGGTGGGGAATAAATGTGATCTGGAGGATGAGAGAGTTGTAGGGAAGGAGCAAGGCCAGAATCTTGCTCGCCAGTGGAATAACTGTGCCTTCCTAGAATCCTCCGCCAAATCAAAGATCAATGTCAATGAGatCTTCTACGACCTGGTCAGACAGATTAATAGAAAAACGCCGGTGGAAAAGAAGAAAGCCAAAAAGAAGTCTAATTGCACACTGCTCtaaaatgcacatacacatcCTCCCCAGCAGCAGTTCTGAGCCAGAATGCTGAGATGAAGACCTGTTGCCCTACTGGCCAGCATTCCAGCCCCATTCAGTAGTTATTGGAAACAACGTCGGCAAAGGCAGATTAAGACTCGCTCCTCAGCTTACAGAATGGAGTGGAGAGAAGTTTGTCTTCTCGCATATTCAACATTTCTGCTTTTCCTTCCCAAACAAACTTAACTTTTTCCCTCTCCCCCAAACCACCCCCCAGCCATGATACCtgataaaacagaaatgaattgTCTTTCTTGAGCTCTTACAATTTTTTGCAATTGCCATTTTTAAAGAAGGACTATATTAACCTGACTCTTGTGGATTCATTCGGGGGAAGTGGGTAACATGCTGTTCATTAATACTTTTCAGAAGCATgaccacatttaaaaataatcatcatattAATGTTTGCAAAAGTTTAATCATGATCATATACtagacttttttgttgttttatccCCATCTTCATGACCAAGCCCCCTTCTTCTTGCTAATATACACTCCAGAAGTGCATCTGGGGCTATACACGCTTCTCCCTATTCAACCGGACCAGCTCATCATCAAGTAACATGTTTTTGCCTGGATTACTTTGTTTTATAGTTGAACTTTCAACGTTTTTCATATTTCCCATAATTTATGATAAATTCCATTTTCTGCACAGAGATTTTGGAAAATGGTTCTTTTATTAAGAGATGGGCAGAAATAACAAATAGGTTTCTTTGTCTCATgctgaaaaatatattgtacTAAAACCAACTCTAATTTCTTCTTGTGTTGTCCTGTCATGCTCAAAGTGGTAATTTTTCAGCTTTTATGAACGATTAAATTTTAGTACATTTTCATTAA

Function

symbol description
rap1a Predicted to enable GTPase activity; guanyl ribonucleotide binding activity; and guanyl-nucleotide exchange factor activity. Involved in several processes, including Rap protein signal transduction; cellular response to cAMP; and regulation of neurotransmitter receptor localization to postsynaptic specialization membrane. Located in perinuclear region of cytoplasm. Is active in glutamatergic synapse.

NR:

description
PREDICTED: ras-related protein O-Krev

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04353 RAP1A; Ras-related protein Rap-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913306.2 True 1608 mRNA 0.43 8 9624300 9637023

Neighbor

gene id symbol gene type direction distance location
LOC117597805 LOC108265689 coding upstream 3344 9615604 ~ 9620956 (+)
LOC117597803 LOC108265688,LOC108265689 coding upstream 9605 9610793 ~ 9614695 (+)
LOC117597804 NA coding upstream 21812 9599821 ~ 9602488 (+)
LOC113526970 NA coding upstream 23216 9594790 ~ 9601084 (+)
LOC113536035 LOC108265641 coding upstream 41560 9574382 ~ 9582740 (+)
ddx20 ddx20,LOC107556298 coding downstream 14848 9651871 ~ 9658559 (+)
cttnbp2nlb cttnbp2nl coding downstream 297269 9934292 ~ 9965096 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding downstream 376317 10013340 ~ 10031188 (+)
mov10b.2 LOC108265909 coding downstream 419206 10056229 ~ 10077521 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding downstream 531362 10168385 ~ 10279934 (+)
G129971 NA non-coding upstream 21768 9600195 ~ 9602532 (+)
G129849 NA non-coding upstream 128570 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 169891 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 286350 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 311849 9309503 ~ 9312451 (+)
G129996 kcnd3 non-coding downstream 35044 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 78633 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 396327 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 448538 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 882417 10519440 ~ 10524699 (+)
cebpb LOC108265421 other upstream 153021 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1311644 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1652551 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1762730 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2193303 7424001 ~ 7430997 (+)
LOC113532719 LOC108265185 other downstream 23792 9660815 ~ 9665693 (+)
G130390 NA other downstream 720923 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 906896 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1046055 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1069696 10706719 ~ 10741425 (+)

Expression


Co-expression Network