itpr3 (itpr3,LOC108441646,LOC106572092,LOC107731245)


Basic Information

Item Value
gene id itpr3
gene name itpr3,LOC108441646,LOC106572092,LOC107731245
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11803048 ~ 11839884 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913762.2
ctttctgcctctttctgcCTGGCAGAACTTTTCTCCTGGCGGGGACTCAGCCGTTTTCCCAACATTTGCATGCACTTCAGGTTACAATGTTTGTCAGATAAACTTTGGGGAATGGGTTTGTACGCGTGTCCGGGACAAACTGCGCGCGGGGATCAGCTGCATCAGGAAGAGGTTTAACACTCAAGGAGTGTGTCGAGCGATTCAAGACATTACCGCAGCACGGGCGcactttttattattgttgttgttgttgttattgtttttataagtGCATCGCTCTTCTAACACCAACACAATGTCAGATTCGGCGTCAAGTTTCTTGCACATAGGGGACATCGTGTCTCTCTATGCAGAAGGTACCGTTAATGGCTTTATAAGCACCCTGGGGTTGGTAGATGACCGCTGTGTTGTGGAACCAGCAGGTGGAGACCTGGATAACCCTCCCAAGAAGTTTAGAGACTGCTTGTTCAAGGTTTATCCAATGAACCGCTATTCTGCGCAGAAGCAATATTGGAAAGCAAAGCAGGCCAAACATGAGAAAGACAAGATTGCGGACCTTGTACTTCTTCAAAAATTGCAGcatgcaTCCAATCTGGAACAGAAGCAGAATGAATCAGAGAATAAAAAGGTCCATGGCGATGTAGTTAAGTATGGCAGCGTTATTCAGCTATTGCACATGAAGAGCAATAAGTATCTGACAGTTAACAAGCGCCTGCCAGCTCTGCTGGAGAAAAACGCCATGCGAGTCACTCTGGATGCTACGGGTAATGAAGGATCGTGGCTCTTCATCCAGCCTTTCTGGAAGCTTAGGGCCAATGGAGACAATGTGGTGGTTGGTGACAAAGTCATTCTGAACTCAGTTAATGCAGGACAGCCTCTTCATGCCAGCGACTATGAGCTCGCCGACCATCCTGGATGCAAAGAGATCAACTCTGTAAATGGCAACACTAGCTGGAAGATCAACCTGTTCATGATGTTCAGTGACCACAGAGATGAAGTTCTTAAAGGAGGTGATGTAGTCCGACTTTTCCATGCTGAGCAAGAGAAGTTTTTGACTTGTGATGACTACAAGGGCAAGCTGCACGTCTTCCTGCGTACAACACTGCGTCAATCTGCTACTTCAGCCACCAGTTCTAATGCATTATGGGAAGTGGAGGTGGTACATCATGACCCGTGTCGAGGAGGAGCAGGTCACTGGAACAGTCTCTACCGTTTTAAACATCTGGCCACAGGCCAGTATCTTGCAGCAGAGGAAAACCCAGGCTACAAAGGGGATATCCCTGAAGTACAACCAGCGGACACCAGTCGAAGCAACAAGAGGAGCTTGGGGGAACggataaaatataaactagtcGCAGTGCCTCATGGAAATGACATCGCCTCTCTATTTGAGCTGGACCCCACCACATTGCAGAAGACTGACTCATATGTGCCAAGAAACTCTTATGTACGTTTCCGACATCTGTGCACGAACACATGGATCCAGAGCACCAATGCGCCTATTGACATTGATGAAGAGAGGCCCATTCGCCTGATGCTGGGAACCTGTGCCACTAAAGAGGACAAAGAGGCGTTTGCAATTGTCTCTGTGCCCACCATGGAGATCAGAGATCTGGACTTTGCTAATGATGCCAGCGCCATGTTGAGCACAGTGGTGGAGAAATTGAACACTGGATATCTCTGTCCAAATGATAGGAGATATGCCATTAAGCTGCTGGAGGACCTTGTGTTTTTTGTGGTGGACCAGTCGAACACTGGGCAGACTGTGCTGGATGTGGTGATGATCAAAGCCAACCGTGAGAGGCAGAAACTAATGCGGGAGCAGCATATTATCAAACAGatATTTGGGATCATTAAGACTCCATTTAAAGAAAGAGGAGGGGAACCCCCTTTGCTGAAATTGGAGGAACTGGCTGATCAGAAGAACACCCCATATCAGTACATGCTGCGGCTATGCTACAGAATCCTCCGCCATTCCCAGGAGGATTACCGCAAAAACCAgGAGGACATAGCCAAGCAGTTCGGGTTGATGCAGTCTCAGATCGGCTATGACATTCTGGCTGAGGACACAATCACAGCCCTGCTGCATAACAACCGCAAGCTATTGGAGAAACACATCACTAAAACCGAGGTTGAGACTTTCGTCAACCTGGTGCGCAGGAACAGGGAGCCCAGGTTTCTGGATTACTTGTCAGACCTGTGTGTATCAAATTATGTTGCCATCCCAGTGACACAGGAGCTGATCTGTAAATGTGTGCTAGATCCCAAAAACCAGGATATTCTTATCAAAACAGAACGACGTCCTGCTAAGGTGAGCCATCACACCTCTGAATATATAGAGGACTATACAGAGGAGAATGAGGTATGGTTGATCTGGACTGATAAATCCAATGACTCTCATGCAAAAAGCATTCGACAGCTTGCACATGAGGCAAGACAAGGAAATACCCATGATGAGAGTGTGCTGACGTACTACAGGTATCAGCTGAAGCTATATGCTCAGATGTGTTCAGACCGTCAGTATCTGGCAATCGATGAGATCTCGAAGTATCTGGATGTCGAGCTGATTTTCCTCTGCATGATGGATGAGAGTCTTCCATATGACCTGCGTGCCTCTTTCTGTAGACTCATGCTGCACGCCCATGTAGATCGCGACCCTCAGGAGCTTGTGACTCCTGTTAAGTTCGCACGGCTCTGGACTGAGATCCCCACCTCCATCAGCATCAAGGAttatGATTCTCATATGGACTACTCAAGAGATAACAAGAAGAACAAGTTTGCCAACACCATGGCTTTTATGGAGGAGTATCTCAACAACGTTCTTAATGATGTCTTGCCTTTTGCTgatgaagagaaaaataaattaacgtATGAGGTGGTGAATCTTGCCAGACATCTGATCTACTTTGGCTTCTACAGCTTCTTCGAGCTGTTACGACTGACACGCACACTTCTGGGTATCATTGACTGCATTCCCAACACTGCCGTGGTCAGTCCTACATTCAATGATGATGGCACCACTAAGAATATCCGGCGCTCCATCCATGGAATGGGTCAAATGATGTCCACCATGGTGCTGAGCAGAAAGCAGTCCATGATGCTTACCGGTGGCCGTAGCATGATGGGTATGGATAATCAAATACGTACTAAGGACAGCATTAACAACCAGGACATCACAGTTATGGACACCAAACTGAAGATCCTGGAAATTTTACAGTTTATCCTGAATGTGCGCTTGGACTACAGACTGTCCTTCCTGCTCTCCGTCTTTAAGAAGGAGTTTGTGGAGGTGTATCCCATGGCAGATGCAGATGCAACATCAGCAGTGGAGAATGCAGCAACCATCAACCTGCAGCACATAGGGGAGCAGGCAGAGGCCATGTTTGGAGTTGGGAAAGCGAACAGCATATTAGAGGTGGATGATGAAGGAGGACGAATGTTTCTGCGTGTGCTGATCCATCTCATCATGCATGATTACCCTCCGCTGGTCTCTGGGGCACTGCAGCTCCTCTTCAAACACTTTAGCCAGAGACAGGAAGTCCTACACACCTTTAAACAGGTCCAGCTCCTGATTTCTGAGCAGGATGTGGACAACTACAAGCTCATTAAAAGTGATTTGGACCGTTTGCGCACCATAGTGGAGAAGTCTGAGCTCTGGGTGGTCAAGAAAAGTGGCTCAGACAAGAAGAAAGATaagaagaaagataaaaaagacaaggatgataaaaaagaaaaggaagagaaaaaggacaaagaagCTGGCCCTTCCAAAGAAAAACTTGAGAAGAGCAATGAAAGCTATCAAAATGTCAAGGAGATCCTGGAGCGCTTAAACAAGATGTGCAATTCTGGGGTTTTTAAGAAGCAGCAAAGGCTTCTGAAAAACATGGGTGCACATAAAGTCATGTTGGACCTGCTGCAGGTCTCTTATGATCGAAGTGACAAGAAAATGCAAGAGATCATTAAGTTCACCCACCTCTTCCTGCAAAAGTTCTGCATTGGAAACCAAGAAAACCAAGCTCTCCTCCACGAACACCTTAACCTCTTTCTTACCCCTGGAGTTCTGGAAGCAGAGACAGTGCAACATATCTTCAATAATAACTACCAGCTTTGTTCAGAGATCAGTGAGAATGTCCTCCAGCACTTCATGAACTGCCTGGCCACTCATGGGCGCCATGTGCAGTACCTCAACTTCCTGCACACCATCATCAAGGCTGAGGGAAAGTATGTGAAGAAATGCCAAGATATGATCATGACAGAGTTATCAAATTCAGGTGATGATGTAGTGGTCTTCTACAATGACAATGAGTCTTTTGCCAAAATGCTGGAGCTCATGATTGAGTCTAGAGAGGGGGTGCAGGAGAACAGCCCACTCCGCTACCATATTTCCCTTGTGGAGCTGCTGGCTGCATGCGCTGAGGGCAAAAATGTCTACACTGAGATCAAATGCACCTCACTGCTGCCCCTGGAGGACATTGTTAGAGTCGTCACACATGAGGACTGCATCACAGAGGTGAAAATCGCCTATGTAAATTTTGTGAACCACTGCTATGTGGATACAGAAGTGGAAATGAAGGAGATCTATACCAGCAACCACATATGGAACCTGTTTGACAATTTTCTCATAGACATGGCTAGGATGTGTATTAACCGTGAAAAGCGCCAGCAAGACCCAGTGCTGGAGAAGTATGTCATTCTGGTTGTGCTGGATACTATAAATGCCTTCTTCAGCTCACCTTTCTCTGAAAACAGCACCTCTCTGCAGTCTCATCATGATATGGTGACAAAGTTGCTGCAATCCACCATGCGTCTGATGGACTGTCCCTGGCTTCAGGCCCAGCAAAAGGCACTGGTGGACAGCTGCATTCGAACTCTGGCCGTGACTGCTAAGACCCGATCGATTTGTCTGCCGGTGGATTTAGAAGCCCTTGTTAACATGATGTTGAACAACAGTTCAATGAATGCTCTGGCCCGTGCCAACCTCAACTACAAGAGTAGCACGCGATCCACACGACCCACCGGCCCCAACAACCCATGGGACTATAAGAACATCATTGAGAAGCTACAGGAAGTCATTAACACACTGGAGGATCGGTTAATGCCACTGGTTAATGCAGAGTTGTCTGTATTAGTGGACGTCCTGCACCAGCCTGAGCTGCTCTTTCTAGAGGGCACTGATGCTCGCAACCGCTGTGAATCTGGAGGCTTCATTTCCAAACTAATTCAGCACACCAAATCCCTGATGAACTCTGATGAGAGCCTCTGCATCAAGGTGCTCAAGACTCTACAGGAGATGCTAATCCGCAACATGGACTTTGATGAGAAGgGGATTGCCTTGAGAAAGGTGTTGTTGCAAAattatctctttaaaaaaaagagcatgaaAACTGATCTTGCTGAACTTGGAGCTGCAGGTGGAGAGGCAGAGCGAGACTGGGCTGCTGTGGCTGCAATACAGTGTCGTCTGGATAGAGAAGGTGGCACAAAACTGTTTACAGACATCATTACAAGCACCAAAAATGAGAAAGTCTTCCTAGAGAGCATCCAGCTAGCCATCTGTCTGTTAGAGGGAGGCAACACTGAAATACAGaACTCCTTCTACAAACTGATGATGGGTGATAACAAGTCTGAGAAATTCTTTAAAGTCTTTAATGATCGTATGAAAACTGCACAGTTGGAAGTCAAAGCCACCACTTCTGTCAGTGTGGGTGAAATGACCCATAAAGCCAAAGATGAAAAAGATCTGGAACCAGGGTCCCATGCAATCTATCCATCAGGGGAAGTGGCTCAATATGGCCAAAATCCCATTGCCCTGGCTCCTGCTAACCAGGCTGAGCAGCAGGAGGTGGACACTGAGATGGGCCCCTCAGTCATGATCATGAAGCCTATTCTACGCTTTCTTCAGCTGCTCTGTGAAAACCACAACCAAGACCTACAGAATTTCCTTCGCTGTCAGAACAACAAGACAAATTATAACCTGGTCTGTGAGACACTTCAGTTCTTGGACATCATGTGTGGGAGCACTACAGGGGGCCTGGGTCTGCTGGGCCTCTACATCAATGAGAACAATGTGGAGCTGATCACACAGACTCTGGAGACGCTCACAGAGTATTGCCAGGGACCATGCCAGGAAAACCAGACTTGCATCGTAACTCATGAGTGCAATGGAATTGACATCATCACTGCCTTGATTTTGAATGACATTAGCCCTCTGTGTCGCTACCGGATGGAGTTGGTGCTGCAGCTTAAGGACAACGCCTCCAAGCTTTTGCTTGCTCTAATGGAGAGCCGCCATGACAGTGAGAATGCAGAGAGGATTCTGATTAACCTTCGACCCCGTGAACTGGTTGAAGTGATAAAGAAGGCTTATCTTCAGGAGACTGACTGTGACTGTGAGGATACAGAGGTGTCACCCAGGGAGGTTGGCCACAACATCTACATCCTGGCACTACAGTTGGCACGGCACAATAAGACTCTCCTTAACCTGTTGAAACCACCAAAAAAGTCAAAAGAAGAGCTTGAAGAGGGCATCTCTTCTATGCTCAGTCTGAACAACAGGGGATTCTCCCAAATGCTGAAATCCTCAGCTCCAGCAGAGGTTAAGCAGGAGGATCCACTGGAGCACTACGCCAAACACACTGCTCAGATTGAGATAGTTCGTGAGGACCGTAGCATGGAGCAAATTGTGTATCCTGTCCACCCCATCTGCGAGTACCTGACAGAAGAGTCCAAGTTCCGCGTCTTCAACACCACAGAGCTTGATGAGCAGGGCAGCAAGGTCACCAACTTTTTTGAGCAGTCCTCCTTCCTGCATAATGAGATGGAGTGGCAGAAGAAGCTACGCAGTATGCCAGTGCTGTACTGGTTCTCTAGGCGAATGACACTATGGGGCACCATCTCATTCAACCTGGCTGTCTTCATCAACCTCATCATCGCCTTCTTCTTCCCATTTGACTCTGGCCAAAGTTCCATTGATTCTTCACTGTTGTACATGCTGTTCTGGGCCTTTTCTGGCCTATCCGTTTTGGGTCTGTTGACTCAGCGCTATGGTCTGCAGCTTGCCACAGTGGCTGTCATCCTGCGCTTCATCTACCACTTTGGCATTGGCCCTACTCTCTTCTTGCTCGGAACTATCAATCTCATCAATAAGATTGTGTACGTTGTGAGCTTTGTGGGTAACAATGGTACATTTATCATGGGATACAAAGCCATGGTGATGGATGTAGAGTTCCTGTACCATCTGGGCTATGTGTTCACCTGCACACTAGGGCTTTTTGTCCATGAGCTCTTCTACAGCCTAATGTTATTTGACCTGATCTACCGTGAGGAAACCCTTTTCAATGTCATCAAGAGTGTGACGCGTAATGGACGCTCCATTCTCCTGACTGCAGTGTTGGCCATCATCCTGGTCTACCTCTTCTCCATCGTCGGCTTTCTTTGCCTCAGGGATGACTTCATCATGGAGGTGGATCATTTACCTTCCACTGGTGCGGATTCTGAGGGGAGCTGCAGTGCAGACGGATTGGACTGCAATGAAGAGACTGGACTTATCACAACATCAGAGGATCAAGATAACATAGAGCGAGCGTGCGACACATTATTGATGTGTATAGTCACTGTGCTGAATCACGGCCTACGAAATGGGGGAGGTGTAGGAGATGTCTTGCGCAAACCCTCAAAAAATGAGCCGCTGTTTCCTGCACGTGTGATATACGATCTTCTCTTCTACTTTATTGTCATCATCATTGTACTGAACTTGAtctttggtgtgattatcgacacCTTCGCTGACCTGCGTAGTGAGAAGCAGAAGAAAGAGGAGATCCTGAAGACCACCTGCTTCATCTGCGGTCTTGAGAGGGACAAGTTTGACAATAAGACAGTGTCTTTTGAGGAGCACATTAAATTAGAGCACAACATCTGGAACTACCTTTACTTCATTGTACTGGTGCGAGAGAAGAACAAAACTGACTACACTGGCCCAGAGAGCTATGTGGCCCATATGATAAAGAACAAGAACCTGGATTGGTTCCCACGCATGCAGGCCATGTCTCTGGTCGTGTCCGAAGGGGAAGGAGAGCAGAACGAGATGAGGATCCTACAGGACAGACTCTCGGCCACCATGAAAGTGGTTACACACCTCACTGGCCAGTTAACGGAGCTGAAAGAACAGatGACAGAGCAGAGGAAAAGGAGGCAGAGGATGGGCTTTGTGGATGTCCAAGCTGGCTCGAATACCGCAATGCCCCCTAGTGCTGCTGGAGGAAACTACAAGGCTTAATGTTGTGCACTGTTACCTCTACCAGCTCATCAGAGTTCAGATCTGAGTTGGGGATTTTACTGACTTTataatgtttttgaatgtatgCATTAATGCAGTCAGGTTTCATTAAATACTAGCCCTGAATGCTACAGAATGTTACAGTTACGACTGGATTTTATGGATTTATGGTAAAAGAATTTAGCATcttcatatgtttttttatatatattttaaagggaaaatgtatcatttgtaatatattttggtgtaattttattaattaacttaTACAGATGTGCCAACTCTACTAGATGTGAAAAGTGCCTAACGCTGCAACAGTCATGTGAAATTATCCTTCTGTGATGCATGTATTTAACCACATGAATAGAAGTCATGAGAGAGGGTAGTGATACAGATTAcattctcttttcctttttattgctacagaaatataaaagctCCCATTATgagcttttcaaaaaaaaaaatttacatgaaGTCGAAGTTTTAAATGGCGTGTGGTAGAGGCAGTGTATAAATAAGAAGAATTCAATAAAACCAAGTGCCAACTGTG

Function

symbol description
itpr3 Predicted to enable several functions, including calcium ion binding activity; inositol 1,4,5 trisphosphate binding activity; and inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity. Acts upstream of or within embryonic skeletal system development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; plasma membrane; and secretory granule membrane. Is expressed in brain; head; and pericardial region. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human ITPR3 (inositol 1,4,5-trisphosphate receptor type 3).

NR:

description
inositol 1,4,5-trisphosphate receptor type 3 isoform X2

GO: NA

KEGG:

id description
K04960 ITPR3; inositol 1,4,5-triphosphate receptor type 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913762.2 True 8837 mRNA 0.46 58 11803048 11839884

Neighbor

gene id symbol gene type direction distance location
cry3a cry1ba,LOC108265656,LOC108441644,LOC107668038 coding upstream 11875 11766040 ~ 11791173 (+)
col2a1a col2a1a,LOC108265655,LOC107668081,LOC107585898,LOC107731244 coding upstream 39457 11738339 ~ 11763591 (+)
spryd4 spryd4 coding upstream 86374 11714943 ~ 11716674 (+)
magoh mgn,magoh,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding upstream 103680 11696883 ~ 11699368 (+)
LOC113538016 NA coding upstream 194491 11597781 ~ 11608557 (+)
alas2 alas2,LOC108265738,LOC108441648,LOC107555603,LOC107745783,LOC107549233,LOC107731137 coding downstream 1699 11841583 ~ 11849987 (+)
LOC113530463 LOC108266055 coding downstream 14283 11854167 ~ 11857253 (+)
fhad1 LOC108266054 coding downstream 18584 11858468 ~ 11861880 (+)
LOC113530451 LOC108266054 coding downstream 21573 11861457 ~ 11876088 (+)
efhd2 efhd2,LOC107711975,LOC107591793 coding downstream 42362 11882246 ~ 11904257 (+)
G131061 NA non-coding upstream 85163 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 251017 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 443668 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 854702 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 886423 10916337 ~ 10916625 (+)
G131279 NA non-coding downstream 377120 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 386268 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 680010 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 850283 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 860828 12700712 ~ 12701501 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 89016 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 106257 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 169204 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 928922 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 1061623 10706719 ~ 10741425 (+)
foxp3a LOC108265789 other downstream 139302 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 356709 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 759814 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1865282 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 2050520 13890404 ~ 13948808 (+)

Expression


Co-expression Network