ddx20 (ddx20,LOC107556298)


Basic Information

Item Value
gene id ddx20
gene name ddx20,LOC107556298
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9651871 ~ 9658559 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914347.2
ACCCACGAACAAGTGAAACAAGGCGCACGGCAACACAGGAAGCGACAAGTATGGCGGCGTGTCTGAAGAAAGCTGCTCATGAGATTGATGTTAGAAAGCGGACAGATGATGTTCTGTCTTCAGCTGGAGTGGAGTTCAGCTCCTTACTGCTTTCTAAACCGGTTCTGGAGGGTTTGGCAGCTTCCGGCTTCCAGAGACCTTCACCAATCCAGCTGAAGGCGATTCCACTGGGGCGGTGTGGACTGGatcTTATTGTTCAGGCTAAATCCGGCACAGGAAAAACCTGTGTGTTCTCCACCATTGCCCTGGACTCCCTGCTACTGGAAAATGCTGCCACTCAGgtcCTTGTTTTGGCTCCGACCAGAGAGATTGCTGTGCAGATCCATGCGGTGGTGATGGCGATAGGCAGTGCCATGGAGGGGCTGGAGTGCCACGTGTTTATTGGTGGACGACCTGTGAGTCAGGACAAACTCCATCTGAAGAAATGTCACATTGCTATCGGATCACCAGGTCGTATAAAGCAGCTGATCGAGATAGGAGCTCTGCTGACGTCAAGTATCCGTCTGTTTGTTCTGGACGAGGCGGATAAACTGCTGGAGGAGGGCAGCTTCCAGGAGCAGATCAACTGGATCTTCTCCTCTCTGCCGGTGAATAAACAGATGCTGGCACTCTCAGCAACTTACCCAGAATCCTTAGCGCAGCATCTGTGCAGGTACATGAGAGAGCCGACGTTTGTGCGACTGAACCCCACTGATCCTGGACTCCTCGGTCTGAAGCAGTTCTATAAGCTGGTGCATGCTCATGCCCTGCCTCATAAGATCTTTGAGGAGAAAGTGCAGAATCTGCTAGAGCTGTTCAGTAAAGTTCCCTTTAACCAGGCACTGGTCTTCTCCAATCTGCATACAAGGGCGCAGCACTTAGCTGATGTACTCTCCTCCAAAGGCCTGCCTGCAGTCTGCATCTCAGgcagtTTGAGTCAGGAGCAGAGGCTGGAGGCGATGTCTAAGCTAAAGCAGTACCAGTGTCGAGTTCTTATCTCCACTGATTTGACGTCACGGGGTATAGATGCAGAGAAAGTGAATTTGGTGATTAATCTGGATGTGCCTCAGGACTGGGAGACATACATGCACAGGATTGGCCGCGCCGGACGCTTTGGAACTCTGGGGGTTGCTGTAACATATTGTTGTCATGGAGAAGAAGAGAATAAAATGATGGCCATTGCTCAGAAGTGCAGTGTGGCTCTTGGCCCATTACCAGATCCGATCCCAGCTGGGCTAATGGAAGAGCTGTGTGATTGGAACGTGATTGTCCAGCCTCCTTCAAAAAATGACCTTGCTCTTTCCCTTGGATCCAGTGTAGAAAAGAAACAGCCCAAATCTGAGCAGAGAGTCTCCAAAGCCCCCAAAGAGCCTCGGCACACACTTCTAACTAAAGAGCAGACTGAGAGTCACAGTCCAGCTAGAACCCAAAAATCCAGTAGTGACCGGAACAAGGGTAAAAAACCTGTCACTACCCCTGACCTCTTACACAGTGCTGAAAATCTAGAGCCTCATCCAGCTCTTACAAGGAAGGAAATGCAGGAGGCCCTTCCCAAAATCCCTCCCCTGCCCTCTTTTAAACCCCAAGGAGTGAGACCTGTGTCCTTCGCTGAGGCCATGGCTGACTTTGAGAACTTTATGACGAATGGCCCTGGACAATCAGTTGAGATCATAAGACAGTATGGAACACATGATGAAGTAACTACCATGGCTGATGGGCAGCATAAAAACAGtgctgacagtagtgctgggaCAGGTGGCGCTTGTATTAAATCTTATAGTAAACATGAAGAGCAAGTCTTAATGGATGGAATTGCTCAGTCTCAGCAGTCAGTGGGTTCAAGCTCTTGTCCAGTGACCTCTAGGTGCATGTCTGGCagcttttcttcctctttagACAGCGAGTCTGAGATGGAGACAGAACAGAAAACGGATGCCTCGGCATCCAGCTCTCTGTCCAGTGCCCCACACCTGAACTGTGGACTGCAACACATTGCAAAATCATCAATGCACGCAGCCAGTACAGCAAAGCAGCCCATCAAACTCAGACCGAGTCCTTCCAAACCTCAAATCAAGACTCATCATCCTAACAATCACACTCAGGCTCTTCAGCACTGCAAATCAAGATCTGTGTCTGAGGAGAAGAGGGCTGGGAAGACTGCCAAGGTAAAGGAAGGGAGCTGGAGGACACGGAGAAGGACACAGGAGGAGGACGATGACGATGACGAGGAAGAGGACAATGAATCCTCTCAAGAAGAAGGGAATGGACATGAACAGGACTATTGGAGAGCATGTTACCAAGCCTGGGAAGAATATTACAACTCTTTGAGTTCAGCCCATTACTACCACTCACATTATAACTGGCTGGCTGCATATCGCATGAATGCTGTATACATGATGGAAATGATGAAACGCTGATTCAAGAACAATAGAAGTCTCACTTCTGGGGAGATGCAAGAAACCTGGTGTCAGATGTATAGCACATGTAGGAGGTCTGAATCTGAGGTGATGCACTAGTGCCTAAAAAGTCTGTGTTAAGACAATGTTGACCAGTCATTAAGAGAGTGTTATGGCACTGTATTGTATCATGGATCAATTAACAATTCTCACTTTACAGTGTATTTATAGCATTGGCTAATAAACGTCTTCTAATTGAAA

Function

symbol description
ddx20 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol. Predicted to be part of SMN complex. Orthologous to human DDX20 (DEAD-box helicase 20).

NR:

description
probable ATP-dependent RNA helicase DDX20 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K13131 DDX20, GEMIN3; ATP-dependent RNA helicase DDX20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914347.2 True 2696 mRNA 0.49 11 9651871 9658559

Neighbor

gene id symbol gene type direction distance location
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding upstream 14848 9624300 ~ 9637023 (+)
LOC117597805 LOC108265689 coding upstream 30915 9615604 ~ 9620956 (+)
LOC117597803 LOC108265688,LOC108265689 coding upstream 37176 9610793 ~ 9614695 (+)
LOC117597804 NA coding upstream 49383 9599821 ~ 9602488 (+)
LOC113526970 NA coding upstream 50787 9594790 ~ 9601084 (+)
cttnbp2nlb cttnbp2nl coding downstream 275733 9934292 ~ 9965096 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding downstream 354781 10013340 ~ 10031188 (+)
mov10b.2 LOC108265909 coding downstream 397670 10056229 ~ 10077521 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding downstream 509826 10168385 ~ 10279934 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding downstream 854880 10513439 ~ 10541772 (+)
G129971 NA non-coding upstream 49339 9600195 ~ 9602532 (+)
G129849 NA non-coding upstream 156141 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 197462 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 313921 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 339420 9309503 ~ 9312451 (+)
G129996 kcnd3 non-coding downstream 13508 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 57097 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 374791 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 427002 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 860881 10519440 ~ 10524699 (+)
cebpb LOC108265421 other upstream 180592 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1339215 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1680122 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1790301 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2220874 7424001 ~ 7430997 (+)
LOC113532719 LOC108265185 other downstream 2256 9660815 ~ 9665693 (+)
G130390 NA other downstream 699387 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 885360 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1024519 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1048160 10706719 ~ 10741425 (+)

Expression


Co-expression Network