LOC113526950 (LOC108266051)


Basic Information

Item Value
gene id LOC113526950
gene name LOC108266051
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9175099 ~ 9180830 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914409.2
CTTAGACAAATCCGCATGCACAAACAAGGACTGGATCTCAACAGAAGTCAAACAGCTTATGATAATAGAATTCGatttgcaaatattttattaaactgcGATTCCTTTTTAGCTCATTTGCACGGTAGGATATCAAGGATAATAGTGTGACACTGAAGAGTGACCACTGTGAAGGTTTTTCTTTGAAATGTGGACGTGTCAAGTGCTGAAGATGGGTCACGCCGCCGTAACGTTTCTGATGCTGATTTGGATGCCGCTATTTACCGTATCGCATCAAGCAGAACTGGAGCAGGCTACAAACTACCTAAAGCGATATGGCTATCTGACTACATCACTTCTTTATTCTAAAGAGCAAGAACCACAGCTGGAGCAAATAACTGAGGCACtgggAATATTCCAGAAAGTGACAGGCCTACCAGTCACAGGCAAGTTGGACAATGCCACGTTAGCCATGATGAAAAAGCCACGCTGTGGCCTTGAGGACCCCTTTAACAACAAAACTCTCAAATTTCGTTTACTAGGTTCCTGGCGTAAGAAGAAGTTGACTTACCGTATCTATCACTATGCACCTGGTCTGGGAATGGCTCAAACAAGGACGGCCATAAAGGCAGCGTTCAGATACTGGAGTGACGTTACACCTCTCCAGTTCTACGAGGTCACTGAGGGAAACGCTGACATCAAAATGTCCTTCCACAAGAGGGACAACGTCTGCCCTGTGCCATTTGATGGACCAGGAGATGTTCTGGCTCATGCTGAAGGTCCAGAATCTGGCATAGTGCACTTTGATGCAGAGGAGCTGTGGACTGAGGGGCAAAAGTATGGAGCAAATCTGAGAATGGTAGCAGCCCATGAGATAGGCCACGCCCTGGGTTTAGACCACTCGCAGTATTCCAGAGCTCTCATGGGCCCTGTGTACACTGGTTACCATGACAACTTCAAGCTCCATCCAGATGATATCCGTGGGATCCAGGCACTGTATGgtAAACCAGAGGAACAACCTCCAGTTACCACAGACTCAACTCCCCCTGATCCCTGCACTGCCTCACTGGATGCTATAATGCTGGGACCATTCCACAAGACGTTCGCGTTCAGTGGAGAGTATGTATGGACGATATCGGATGATGGCTATAACACACCAATACGGATTAACATCCTGTGGAAGGGACTGCCTGGTTATTTAAATGCTGCCGTGCATTCGCAAAGGACCAACAAATCCTACTTCCTTAAAGGTGATAAAGTTTGGAGGTATTCCCGCTTTAAGTTGGACCATGGTTATCCCAAACTGCTTGCTATCCCGCCGAATATTGATGCTGCCTTTTACTCGCACAGCAAtaaaaaactcatttttatCAAGGGTTTGGAGTACTGGCAGTGGGATGAACTGGGTTTCCCTGATGAACTGAAACGATTTCCTAAACCCCTCTCCAATCTCATCCCTGGGTTACCGTCCAATCCAGACGCAGCGTTCACCTGGACTAATGGTCACATTTACGTTTTTAAAGGAGACCAGTACTGGCGTGTGAACCCCAGACACTTCCTAGAGAAAGGTTACCCACTAAGCATGAGAGAGCGCTGGATGCGGTGCGGCCATTAACCCACACACAGCAGTAACAATTTAAACTTCACTAAGCATTAAGCATTAAGACATCCGAGTCCGAACACTGatttagaaaaatgaaatatttcatattttaggaattatacactgtataacTGTTGTGACTGTTTTGCTGAATTTACTAAATATGCCATTAATCTGGAGCCTTCCACTACTAACCCCTAGACATAGGATTTCTGTGTTGGAGCATTAAGTGTAGGACTAGTTGCACATCCTGTTTTGAATTCCATGTTTATCGATGTTTTCACTTCCAGCGCAAATTGCTTGCCATTGACAGACACAATCAAGctcagttgtttttttgttgcacACAAGGCCACTGGCGACTGCAATCTCACAAGCATTATAAAGTTTTAGGTAATAACGTACAGTATggtgtatgtataatatatcCATGTGACTATTCTAGATATTAGTAATCTATACTCTTGCACAAAACACATTTGAGGAGCTTTTTTCTAAGAGGAAATGCATTACGACCTGAAAACAATCATCAAACTCAAGACAGCTGATATATGaataacactgttttat

Function

NR:

description
PREDICTED: matrix metalloproteinase-19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914409.2 True 2152 mRNA 0.44 9 9175099 9180830

Neighbor

gene id symbol gene type direction distance location
pym1 pym1,LOC102777374 coding upstream 5523 9165978 ~ 9169576 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 172275 8950214 ~ 9002824 (+)
LOC113533404 NA coding upstream 259288 8902248 ~ 8915811 (+)
ajap1 ajap1 coding upstream 633673 8483083 ~ 8541426 (+)
LOC113534163 LOC108265188,LOC108425021,LOC106518891 coding upstream 772552 8394989 ~ 8402547 (+)
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding downstream 113550 9294380 ~ 9295483 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding downstream 330109 9510939 ~ 9519258 (+)
LOC113534601 klhl12 coding downstream 340624 9521454 ~ 9537110 (+)
tuba5 tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418 coding downstream 358003 9538833 ~ 9543279 (+)
kdm5bb LOC108265643,LOC108425081 coding downstream 366476 9547306 ~ 9573038 (+)
G129707 NA non-coding upstream 40164 9119938 ~ 9134935 (+)
G129704 NA non-coding upstream 51230 9112784 ~ 9123869 (+)
G129621 NA non-coding upstream 168315 9003469 ~ 9006784 (+)
G129439 NA non-coding upstream 449211 8725452 ~ 8725888 (+)
G129440 NA non-coding upstream 451029 8723664 ~ 8724070 (+)
G129805 LOC108265845 non-coding downstream 128673 9309503 ~ 9312451 (+)
G129831 NA non-coding downstream 143878 9324708 ~ 9337950 (+)
G129849 NA non-coding downstream 269732 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding downstream 272204 9453034 ~ 9454409 (+)
G129971 NA non-coding downstream 419365 9600195 ~ 9602532 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 862443 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1203350 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1313529 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 1744102 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 2363453 6756763 ~ 6811646 (+)
cebpb LOC108265421 other downstream 281258 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 479985 9660815 ~ 9665693 (+)
G130390 NA other downstream 1177116 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1363089 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1502248 10683078 ~ 10696831 (+)

Expression


Co-expression Network