mc3r (mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456)


Basic Information

Item Value
gene id mc3r
gene name mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9294380 ~ 9295483 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914420.2
ATGAACGGATCTTACCATCACATGCTCCTGCAGGACAGCTCTCTGATCAACCTCACAGAAGAAGCAGAATACGAGAATGGGAGCACATCGCTGTGGCTGTCTAACGGCAGTGTCGCTCCTCCTCCATCAGGGGCGCTGTGCCAGCAGGTTCAGATCCATGCTGAAGTTTTCCTCGCGCTTGGGATCATCAGCCTGCTGGAGAACATCCTGGTCATTTCTGCAGTGGCGAAAAACAAGAACCTCCATTCGCCCATGTACTTCTTCCTCTGCAGCCTGGCAGCGGCGGACATGCTCGTGAGTGTCTCCAATTCCCTGGAAACGATTGTGATCGCCATTCTTAGAAACAATCTGCTCAAACTCAGTGACTATTTTGTGCGTTTGATGGATAATATTTTCGATTCCATGATTTGCATCTCTCTGGTAGCATCCATTTGTAACCTCCTAGCCATCGCCGTTGACCGCTATGTCACCATATTCTATGCTCTACGCTACCACAGCATTGTAACTGCGCGGCGTGCATTAAGTGCCATCGGCACCATTTGGCTCACCTGCATCATCTGCGGCATTGTCTTCATCATATACTCCGAAAGCAAGATGGTCATCATTTGTCTAATTACAATGTTCTTTGCAATGCTGGCACTGATGGCAACACTCTATGTTCACATGTTTTTGCTTGCCCGACTCCACGTCCAGCGCATCGCGGCATTACCAGCTGCAGCTGTTGCTGCTGGCGATCCGGCACCACGGCAACGCAGCTGCTTAAAGGGAGCGGTGACTATCAGCATCCTCTTGGGGGTGTTTGTGTGCTGCTGGGCACCTTTCTTCCTCCACCTCATCCTCCTTGTGGCATGCCCACGCCACCCACTCTGCCTGTGTTACATGTCACACTTCACCACCTACCTAGTGCTCATCATGTGCAACTCAGTCATCGACCCCATCATCTACGCCTTCCGCAGCCTGGAGATGAGAAAGACCTTTAGGGAAATCCTCTGCTGCTTTGGCACAGGGTGTCCAGCTCCACCCTGCGAGCGAGAACGAGggatagacacagagagaccCAGGGAGAGACCACAGGAACGAGAgaaggagagtgagacagagtga

Function

symbol description
mc3r Predicted to enable melanocyte-stimulating hormone receptor activity and peptide hormone binding activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain and epiphysis. Human ortholog(s) of this gene implicated in obesity. Orthologous to human MC3R (melanocortin 3 receptor).

NR:

description
PREDICTED: melanocortin receptor 3-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004977 melanocortin receptor activity molecular_function

KEGG:

id description
K04201 MC3R; melanocortin 3 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914420.2 True 1104 mRNA 0.52 1 9294380 9295483

Neighbor

gene id symbol gene type direction distance location
LOC113526950 LOC108266051 coding upstream 113550 9175099 ~ 9180830 (+)
pym1 pym1,LOC102777374 coding upstream 124804 9165978 ~ 9169576 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 291556 8950214 ~ 9002824 (+)
LOC113533404 NA coding upstream 378569 8902248 ~ 8915811 (+)
ajap1 ajap1 coding upstream 752954 8483083 ~ 8541426 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding downstream 215456 9510939 ~ 9519258 (+)
LOC113534601 klhl12 coding downstream 225971 9521454 ~ 9537110 (+)
tuba5 tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418 coding downstream 243350 9538833 ~ 9543279 (+)
kdm5bb LOC108265643,LOC108425081 coding downstream 251823 9547306 ~ 9573038 (+)
LOC113536035 LOC108265641 coding downstream 278899 9574382 ~ 9582740 (+)
G129707 NA non-coding upstream 159445 9119938 ~ 9134935 (+)
G129704 NA non-coding upstream 170511 9112784 ~ 9123869 (+)
G129621 NA non-coding upstream 287596 9003469 ~ 9006784 (+)
G129439 NA non-coding upstream 568492 8725452 ~ 8725888 (+)
G129440 NA non-coding upstream 570310 8723664 ~ 8724070 (+)
G129805 LOC108265845 non-coding downstream 14020 9309503 ~ 9312451 (+)
G129831 NA non-coding downstream 29225 9324708 ~ 9337950 (+)
G129849 NA non-coding downstream 155079 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding downstream 157551 9453034 ~ 9454409 (+)
G129971 NA non-coding downstream 304712 9600195 ~ 9602532 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 981724 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1322631 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1432810 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 1863383 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 2482734 6756763 ~ 6811646 (+)
cebpb LOC108265421 other downstream 166605 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 365332 9660815 ~ 9665693 (+)
G130390 NA other downstream 1062463 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1248436 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1387595 10683078 ~ 10696831 (+)

Expression


Co-expression Network