efhd2 (efhd2,LOC107711975,LOC107591793)


Basic Information

Item Value
gene id efhd2
gene name efhd2,LOC107711975,LOC107591793
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11882246 ~ 11904257 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026915550.2
AACTGCATAGTTATTCTTCTGCTGTTCACGCGAGCTCTACACACAGGCGCGCGCTGTCTGTTTGAATTGTGCGGGGACACTGAATAAATCGTTGACCCGCGTCATTAAGCTCGTGCGCTACATTAAGCCTCCGTACAAGCACATACTCAGGGTTTTACTCACTGAAGAGAGTCGCGTGCGAGCTGCGGACGTTGTAGACTGAAGTGGTTGATAACCCATGTGGTTTGTGTAGTGGGCAGCGAGCTTGTGATAAAGCAGTTAAACAGAGGAAAATGGCTTCGAACGAGCTGTCAGCGAAGCTTAACCGGCGGCTGAAGATAGAGGAGGGCGCGGAGGAGCCGCACGCCGTGGACGAGGCTCATGAAAACGGCGCGCATGAGAAAGCCACCACGGCCAGCGCCGACTCCGAGCTGGGAGCCAAGCTGCTGCGGCGAGGCGAGCTGAACGAGGGAGTGGGCGAGCACCAGCAGCCCAGCATGAAGGTCTTCAACCCGTACACCGAGTTCAAGGAGTTCTCCAGGAAGCAGATTAAAGACATggagaaaatgtttaaacaATATGACTCTGAGAAGGATAACTACATTGACCTGATGGAGCTGAAGCTGATGATGGAGAAGCTCGGTGCTCCACAGACTCACATGGGCCTGAAGAATATGATCAAAGAGGTGGATGAAGACTTGGACGGCAAACTAAACTTCAGAGAGTTCCTCCTGATCTTCAGGAAGGCAGCAGCAGGGGAGCTGGCTGAGGACAGCGGCTTGTGTGTCTTAGCTCGTCTCTCTGAAATTGACGTGTCCACTGAGGGTGTGAAAGGAGCAAAATCTTTCTTTGAAGCCAAAGTCCATGCCATTAATGAGTCGAACCGTTTCGAGGCGGAGATCCGTAACgagcaggaggagaagaaaCGACAGGCAGAGGAGAAGAAGCAGAGACAAGCGGCGTTCAAAAATCTACAGTCAGCCTTCCAATGACCATCTTCCTGTGCTATTAGAGCTTTGCTTTatccttcctcctcttctttgtCGTTTGTGTCAGTCTCCTGTTTATCAGAGCACCATAGCAGAGATACTATGCAACGCTTTTAGAGGTCTCCATTCCGGGATCACTTCCTTATTGAGGGCTCATAGTGTCAGTTTCAAGCTTAGAACTTTAAGTAGGGTGTTGAATTGACTACTTAGATCCTCactatttgtctctctcttgatTTTGAACTTGGTCCTCCAAGGACCTGTCTGTTTACACTGGACTGGATGTGTCACTTGGCTAATTTGTTCTCCACTGatataatttacaaatatttgCATGTATGTGAGGACCTTCTACTTCACTTCACTGTCGCATTGTTGTTTAgtcaaataaatacacaggtgTTAGTATCTCTTTTAAAGggaattttttaatgtttttaaactgtTGGGTTAAATCGGCGCATCCAGTCCATTGTGATCCCCTTGTATTCGGCGTCATGCATTGTGAAATAAAGACTAGGTTTCATGGTATCCTTGCTAACTGGGTTAGCACAGCAAAATGTTTATGTACTTAAACCTTGCCTAAAAGAGTTCTGTATTTTTACACTGTGGCTTAGAAGGGAGTGTGAGAACACACATGTGGTGATGGTGTGTTCTGGTGGGTtgggttttatttcttttccttttctgaatGATAACTGTGACAATCTTCCCCTTAAATGGATCTCTAACATCAGCTTCTGTTGCTTTGTCGCTGCTGATGAGTCTGttgctcacacacatgcacacacaaacgtTTCCATTCTCGTGACGCACTAAATGCCCTTTAATAGCCATTATGTCtcattgttattgtttattagtGTATTATGGTTTTACTAGCCAGTCCTtttgaaaaaatgtgatgttttccCCCCACACAATCATCAGTACTAATTTGTCTGATTTGTGTCAGACGTCTGTGCTcacattgtgtgtatgtttgtgtgttttaactgAGATGCTCATGAGGGGAGGAGGGATATGAGAGATTATAATGAGTGCAGAGTTAAACACTCATCTCCTCCTTTTAACTGCATGCACTGCTTTAGTGTCaggtgcctgtgtgtgtgtgcgtgcacgctATAGCCAGTACACAGCTTTAAGCATTTGGAAGTGTTTCGATCCTTCTTTTGAAATGTAATCTGGTGCTGGCATGAAAATATAGTCGCTTACCTCTCTCAGCGAAGCCCTTTAGACTATGTTTGAAAATTTGCTCTGTAACATTGTggaaagaaattttttttttctgcacagtgTGTAACATCAGACTGgctaattcatttttaataactttaattcTACAAATAATGTTTTACTATGGAGAAAAAGGGCACATTGTAATAGACAAAATTGTCTCCATGCTTccatttgaatgattttaaatCGTAATTGAATTTCAGTTGTTTGACATTTAAAGATAAAACTCGTGCGACTTGCAGCACATTTCAGCACAGGTAACTGAGAGATGTGTAAAgaatcaaatattttttttccaggaataaaattaaactgCATTTAGTTTTGTATGGTGAGGGGccttttgaaaatgtttattatttcctAGAAATGCCATCATGTTCACAAACTTGTCTCCTTTCACAATATCAGCTGTTCCTCACAGTGCTGTTCCATGATTAAATGTGagatattttctgtatttttatttttaagatattggTCTGCTATGCATcctgttatattcatgttaaGGACAATATATTtggagtcactggcagtctgaTGATCTGTATTATGAATAAGCAAACAATAGATGCATGAATGTTTCATAGCTTTATGTCTTCAAATGTATTCGAGTGTTCTGCAGATTAAATGTGGGGTTTGAGTGAATAAtctagtgtgtgtatatatggtgtTGTAGATTTTTGATAGAAACACTGGAGTACCTGAGAGATATAAAAACTGTATGATGAAAGTTTCTTCTCTAAGGATCCTCCATCAACATTTATcttactattaaaaaaacatgtacaccAGATATGTCGTTGTATACATTATAAAATGACGATCCATGCAAAGACAATATGGAAGATTCATTGCAGAATGTAGAAATGGATTTCACAAGCCATTCCATGAACTACTTCTGCTTAAGTAGCCATTCTGTAATTCTCCACATAAATCTTCCAAGTTGTCAGGCATGAAATTCATTGTCAGAGGGTTGATTGCAGTTGTTATGTTCAACAAATCACATGGGGAATATTATAATCCAGATTGAAAGACTTCAACTTTATGCTGACCACTAAGCAGCATGACACGTTATCCAATTAGCCAACTCTCAAAGCACAcctccttttatttttactcctcGTTTACTTCAGTGTTTCCATTGCAAAGGCGTTTACTGGTAACTTAGAGACTGGTGGTTAATGGGCCAGTGCTTTCTAACTCCACCTTCTCTGCAGGCAGCCGAAATACTGTACTGTTCCTTGATTTTTCGATTTACTGTCTCTTTGTGACTCCATTGTAAAGACGTGCCAAATGTTTTAGCAAAGTTCTGTTTGCTTTACTTATTTTAGCATAATTCCATTAACTGTCCCCTGAGTTCAATGTTAAGTGTTGTTGACCATAAAAAGATGACCAAAAACTGA

Function

symbol description
efhd2 Predicted to enable calcium ion binding activity. Orthologous to human EFHD2 (EF-hand domain family member D2).

NR:

description
EF-hand domain-containing protein D2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23922 EFHD2; EF-hand domain-containing family member D2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026915550.2 True 3616 mRNA 0.41 4 11882246 11904257

Neighbor

gene id symbol gene type direction distance location
LOC113530451 LOC108266054 coding upstream 6158 11861457 ~ 11876088 (+)
fhad1 LOC108266054 coding upstream 20366 11858468 ~ 11861880 (+)
LOC113530463 LOC108266055 coding upstream 24993 11854167 ~ 11857253 (+)
alas2 alas2,LOC108265738,LOC108441648,LOC107555603,LOC107745783,LOC107549233,LOC107731137 coding upstream 32259 11841583 ~ 11849987 (+)
itpr3 itpr3,LOC108441646,LOC106572092,LOC107731245 coding upstream 42362 11803048 ~ 11839884 (+)
taf10 taf10,LOC106572212,LOC107679390,LOC107711978,LOC107591795,LOC107550511,LOC107707678 coding downstream 2491 11906748 ~ 11910004 (+)
suv39h1b suv39h1,suv39h1b,LOC108265881,LOC108442234,LOC107550505,LOC107679310,LOC107591797 coding downstream 43194 11947451 ~ 11957403 (+)
tspy LOC108265788 coding downstream 91786 11996043 ~ 12000770 (+)
sema3ga sema3ga,LOC108265594,LOC108442245,LOC107591802,LOC107550503,LOC107731285,LOC107669661 coding downstream 105816 12010073 ~ 12033492 (+)
stk38a stk38,LOC108265501 coding downstream 172254 12076511 ~ 12096739 (+)
G131061 NA non-coding upstream 164361 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 330215 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 522866 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 933900 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 965621 10916337 ~ 10916625 (+)
G131279 NA non-coding downstream 312747 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 321895 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 615637 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 785910 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 796455 12700712 ~ 12701501 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 168214 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 185455 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 248402 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 1008120 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 1140821 10706719 ~ 10741425 (+)
foxp3a LOC108265789 other downstream 74929 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 292336 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 695441 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1800909 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1986147 13890404 ~ 13948808 (+)

Expression


Co-expression Network