eps8l3b (LOC108265744)


Basic Information

Item Value
gene id eps8l3b
gene name LOC108265744
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12257576 ~ 12274064 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916796.2
TTAAAACCTACCTGAGCACACTTCCCGTCTAATCGTACAGGTGCAGCTGGACTTTGCACCAGGGTTTTTGCTAAACGAAAAAATTCGGCAAATTTGTGAATTTTCTTCTGGTGTGGGTATATAAATGGTGGTTTGCCGGGATTAATAATGGAATATTAAGGTTGGAACTATACAGACATTCTCAGGTGCGTGACATCagaaaggaaaaatgtttatGAACAGCAACGCCCCACTCTCCTCTTCAAGAGGTTTCTCATCAGAGGCATCCTCTCAGAGGTCCGATATGTCTCGACCCAGTGCAAAATCCATCTATATGCAAAGGAAGGAATATTTGGAGGCCGTAAACAAACAAGGAGATGCCTTTCAGTACAGAGTGGAGcacttgtTTACATGTGAGGTAAATGGGAGGGAGGTGAGCAGCACTGATGACTCCGTGGCCAAGCTGAAGAGTTTGGAGAGCCGAGGGAAAGTGTGGGGTCAGGATATGATCCTGCAGGTGCAGGGTGGCCACTTACAGCTGTGTGACGTCGAAACAAAGGAGGTTCTGGACTCATTTCCTCTTGGCAGCATCTCACAGACGAAAGCAATCCTGGACAGCTGCATGTATGACTCCCTCTTGATGGTCACCACTCAGGACAACAGCCGGAGGGCTCCAAATGTTTTCTTGTTCCAGtgtgaggaaactggaGCAGAGGAAGTGAAAGCTGATTTAGACAGAGAGATCCAGAACAAGGATGAAGGGCCGGGATTTCCACCAAGTGAACCACCATTTGACATCAGGAGTAATCTGGAGAACATAATAAGTCAAGGTTATTCGGGGGGTTTCCGCAGACCTGGCCCCCCTCCAGTGCACTCCACACCCCCTCCACCTGAATATCCTCCTCCTCAGTCCAGCATCTACCACGACTATGATGATCACCAGCCTCCAATGTTTCCACCCAGAGAGGAGAGCTATCTCAGTCCAGACATGCCTGAACGACAAAACCACACAAATCAGCAGCCTCTTCCCCCCCAGTTAGACATCGACAGGAGTGTGGAAATCCTTAATCATGTTTTGGCTGACATTGAGTTCTTTATTGGGAAAGTTGGAGAAGCTTTAGCACAAGAggatggaaagaagaaaaagaaaaagaaaaagaaaggcaaaAGCACAATAATATATGGTGAAAACTTTCCCTCTATAGAGGAATTTGTGGCCTGTcttcaaaaaattaaatatggctTTAATCTCCTTGGGAAACTTAATGGACACTTAACTAATCCTGATGCTCCTGCCTTTATCCACAGTCTTTTCTCCTCCCTTAATTTTCTGGTGGTGCAGTATCCTCCTGAGGTGGCTCCTTCAGTTTTGAGTCCCCTTCTCACAGAACAAGCTCTGCAGCTCCTCAGCCAGGTGGTGACTCCAGAGGAGGATCAGCTCTGGAACAGTTTAGGAGATGCCTGGAATTTTCCCAGATCAAACTGGCCGAATGCAGATCAGATACCACCATATGTTCCACAGTTTTATGATGGCTTCCAGCTGCCTGCACCGGTCCCTCCCCAGTCAGGACACATGAACCATCCTCTGTCACGGAGCAACAGTCCGAGATTTCCAGCTGAGAATGACATGCAACCACGACCTGGACAGGATAACAGGCCTTTTGGCGCTCCGCCTGAACGCTCAGGAGAACCTCCGCTCTACATGCGAGTGGTCTACGATTTCACAGCCAGAAACCGTCAGGAGCTGAGTGTGATGAAAGGTGATGTGGTGCAGGTGGTAGACAAGTCCAGGCAATGGTGGATAGTGCAAAACAATCGGGACGAGGAGGGTCATGTGCCTCCAAATGTTCTAGAGCCCATGAATGCACAAGAGCCAGCAAGAATGAATCGACCTCCAAATCTCGACATGAAATCCAGCCCAGAGGAAGTCAGGACCTGGTTACAGTACAAGGGCTTTTCCAACTCGACAATACGAAACCTGGGTATGATGAATGGAGCATTGCTTTTGGGCATGAGGCGTGATGATATACGAGCTGTGTGCCCTGAAGAAGGAGGTCGTGTTTTCTTCCAACTGCAGGCTGTTAAATCATCTATGGCACTTGCTAGTGAAGCAGAATATAACCACTACAATGGCCGCTAAACCTGACATCATGGGCTTTGGTGAGGGGGCAGATGGCGGTTGACGGAGTCGCTCAAGAGAACTGCACAGTGATTATATGCTGGCCTTGCCATCATTTGTTGGTTCATGAAACCAAGTTTATGATCTGAACATAAATATCAAATGAAGTTATACTCccaatacaattttaaattggTGGTGAAAATCTGATGTTTCATGTGATGCCTTTCTTGATCCTGTGTTTATCCTATTTATCTAACATTTGTGTCAGAAGAATGAGTCTAAATTTTAATATGAAGTTAATAGTGAAAGTATATatgattaaaacattaaaaaattcatatttacagtCAGATGTTTTCAGTCTTTGATCCAGttaaaaatatcagcaataaccAGAAACTATTCCAAAGAcacattattatgtttatattatgattattattatgattacagCATTAACTCTCCATATTGCTTGTGTATCTTTGTATATACATTCCTCTTTACTTTACAGACCGGAATTTTCATGCAAGAGTGTAGGTCATGTGTCATCACAAAATATGATCACTGCTATCTAGAATGGTTTTGCAACTTCTGGTACACCAAACTTCTGAACTTTgccctatttaaatgtattgaTGTTCAAATAAAAGTGCCTTTTCATCAATGGAAA

Function

NR:

description
epidermal growth factor receptor kinase substrate 8-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916796.2 True 2771 mRNA 0.44 20 12257576 12274064

Neighbor

gene id symbol gene type direction distance location
atp5pb atp5f1,LOC107668113,LOC107679218,LOC107711984,LOC107731279 coding upstream 317 12249509 ~ 12257259 (+)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458 coding upstream 69947 12103220 ~ 12187629 (+)
stk38a stk38,LOC108265501 coding upstream 160837 12076511 ~ 12096739 (+)
sema3ga sema3ga,LOC108265594,LOC108442245,LOC107591802,LOC107550503,LOC107731285,LOC107669661 coding upstream 224084 12010073 ~ 12033492 (+)
tspy LOC108265788 coding upstream 256806 11996043 ~ 12000770 (+)
gnat2 gnat2,LOC108265815,LOC108442114,LOC102236489,LOC108236782,LOC107390790,LOC107591823,LOC103467179,LOC107679180,LOC106946560,LOC107731158,LOC107668040,LOC107550493 coding downstream 40840 12314904 ~ 12322876 (+)
trnad-guc_1 NA coding downstream 107935 12381999 ~ 12382070 (+)
amigo1 amigo1 coding downstream 116191 12390255 ~ 12396660 (+)
sort1b LOC108265432,LOC108442120 coding downstream 140130 12414194 ~ 12433146 (+)
nfyal nfyal,nfya,LOC108265435,LOC107668092 coding downstream 164048 12438112 ~ 12447984 (+)
G131282 NA non-coding upstream 31214 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 40362 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 539691 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 705545 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 898196 11355449 ~ 11359380 (+)
LOC117597859 NA non-coding downstream 245830 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 416103 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 426648 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 438561 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 535059 12809123 ~ 12809738 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 27575 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 261724 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 543544 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 560785 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 623732 11622302 ~ 11633844 (+)
rbm15 rbm15,LOC107731203 other downstream 325634 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1431102 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1616340 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1675873 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 2048108 14322172 ~ 14323450 (+)

Expression


Co-expression Network