sema3ga (sema3ga,LOC108265594,LOC108442245,LOC107591802,LOC107550503,LOC107731285,LOC107669661)


Basic Information

Item Value
gene id sema3ga
gene name sema3ga,LOC108265594,LOC108442245,LOC107591802,LOC107550503,LOC107731285,LOC107669661
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12010073 ~ 12033492 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916956.2
ttaagtgtgtgttgttgggAGTGGGAGTGTGAGGCAGGGAGACGTTCGAGGGATCCAGCACTGAACACCTGCCATGGCTTAGCAAACCCAAGAGGTTCGAGTAATCTCACACCAGTCATCTTTCTTCAGCACAGGGATCCAGCTcagttttttttgctgtttgttgcATTGTAGCGTTCACGGTCTGAGAGATAAGAGAAAGTCTGCTTTATCTCCTCTCACAGGACAGCAGACGCAACACATCGATCTCTGAGAGCAAAGGACTGACATGAAAAGAAGCCAAAACCACTCAAGCGCTTGcagattgtttgttttttgaagtATTGGGCGGATTATAGTGTCTTTTCTTTCCCCACACTGAGGAGAAAGCGCATCGAGACGGAGAGGAATGTGCTGATAAAATCTCACCTGCGCCACAAAAGTCAGCAGCTTCATCTCTCTTTCCTGACAGAAAGCTTTCCTGGACACCACGAATACACAATAAGCAGTGCCAGAGTCAACATGTGAAAACACCTGAGCGCATGACCTGTGCTGACAAACATCTAGTGAGAAGAAGCCAGATCTGATCAAGCAGACTGGGTCTGATCTTCAGCCAGTGGAGCACtcaagaaaagagaaaagGACTTCTGAGTCACATGGGCATTATGGGAACCAGAGTCATCCTGTTGCTGCTggtactgtgtgtttgtggtgtatCCTGCATCCTGCGTTCGACTCCCAGAGTGGCTTTATCTTTTAAAGAGCTAATGGACACTCGGACAGCAAGACCATTCAGCTTATCGTTCGACACCAGTGATTACCGGATCCTCCACGTGGACCAAGATCAGGGCCGTCTTTACCTGGGCAGCCGCGAGTACCTCGTCTCCCTGGACATGCAGAACGTCAACAAGGAGCCTCTCATTATCCACTGGCCTGCTCCGacacagagaaagggagagtgTCAGATGACAGGGAAAGGAAAGCATGGAGAGTGTGCCAACTTTGTGCGTATGATCGAGCCATGGAACAGGACTCATCTGTACACATGTGGCACTGGAGCTTACAAACCCATCTGTACCTTCATCAACAGAGGCTGGAGAGCGGAgGACTACCTCTTCAGGCTAGTCCCTGGATATGTGGATTCAGGAAAGGGTAAATGCTCCTACGATCCAAATCATGAAGATGTGACTGCTGTCATCAATGGCAGCCTGTATGCTGGTGTGCATGTGGACTTCATGGCCGCTGATCCAGCTATCTTTAGGACGATGGGGAGCAGGCCAGCTATTAGAACAGAGCAGTATGACTCCAGGTGGCTCAGTGAACCAGTGTTCATTCAAATAAAGCAGATTCCTGACAGCTCTGAGAAGAATGATGACAAGCTCTACTTTTTCTTCCGGGAGAAGAGTCTGGACTCTGGAGGGACGGCGAGCCCCAGCGTGTTGGCCAGAGTGGGACGAGTGTGTCTGAATGATGAGGGAGGCCAGAAGTCTCTAGTTAACAAGTGGACAACGTTTTTAAAAGCCAGGCTGGTGTGCTCTGTGAAGGGTGAGGATGGTGTGGAGACCTTCTTCGATGAGCTGAGAGACGTCTTTATTCAGTCCACCCAGGATGAGCGTAACCCTATGGTGTATGCCGTTTTCTCCACTGCAGGGTCTGTTTTTAAGggatcagctgtgtgtgtgtactctatGGCTGACATACGTAATGTATTCAATGGGCCTTTTGCCCACAAACATGGGCACAACTACCAGTGGACAATGTACACAGGAAAGATCCCCTATCCTCGACCTGGAACTTGTCCTGGTGGTACGTTTACACCGAGTTTGCACTCCACTAAGGAGTTCTCAGACGAGGCTGTGAACTTCATTCGTGCGCACCCACTCATGTATCACCCTGTGTATCCTATACACAAGCGCCCCCTGGTGGTGCGCTCAGGCGTAGACTACAGGTTCACCACCATTGCTGTGGACCAGGTGGATGCTGTGGATGGGAGATATGAGGTGTTTTTTCTAGGCACAGATCGTGGAACAGTACAAAAGATTATAGTTCTGCCCAAAGATCCAACCACAGTGGAAGAGCTGACATTAGAGGAAGTGGAAGTTTTCAGGACACCAGTTCCTGTTAAAACAATGAGGATATCTGCTAAAAggCAACAGCTGTACGTATCGTCAGACGCAGGTCTTACCCAGGTGTCATTGCATCGCTGTGGCGTGTATGGTAAGGCTTGCTCAGACTGCTGCCTGGCCCGTGACCCCTACTGTGCATGGGATGGAGAGAGCTGCACCCCCTTCACACAGGCTACTAAAAGgaggAGCAGAAGGCAGGATGTAAAACATGGTGACCCTCTACGGCAGTGTAGAGGATTTAATGCTAAAGTGGAGAAGAGACTGAAGGAGACGGTGCAGTTTGGTGTGGAGGGAAGCAGCACGTTTTTGGAGTGTGTGCCACGATCGCCTCAGGCTACTGTCAAATGGCTCTACCAAAAAGACGGAAGAAGGAAAATGCTGAATAGAGATGGGGAAGTACTGAGCACACCTCAAGGTGTCCTGCTGAAATCACTCACCCACTCAGACGCTGGGCTGTACCACTGCCTGGCCACTGAGAATAACTTCAAACACACTCTAGCGCGTGTCTCCCTGCACATTCTGGACCGCGACATCGCAGTGGCCCTCAGTGTACCCGATGACGAGGATAAAGAAGAGGAAATGATGAGGGGGCATCACAAACCTGAAGCCCATCCCCCAGCTGGCAGTGTGCAACCCTTAGAGCCTGAGATGCGTGTGATCAACCAGTATTGCCAATCCTACTGGGAACAGCTCACTGACCGAGGGCAGCAGCAAAGCAAACGTCCAAACCGCAGACACACAGAGGGCCACGAGCCCAGTGGAGGCTGAGCCTGGCCTGCATACTTCCTCCATTCACCTATTGGTccattctgtctttctgtctatgtaCTTCGTTGAGAGTGAGGTGAAGGGACACAGGCGTAATCCTATTTCATCCTATTTCATAAGAGACTCGTCTACTCAactctcattttcatttttgttgcgTTCGTCTTGTTATTGCGGTTTGCATactttcttctttatttatgtTCCATGATGAGTCATATGTCCTCAGCTGTCCTTAAGTCTTTTGGTGTTACATTGATTTTGGACCATATTTTGACCATTACAAATACTCTGACCATCATTGtgatatttgtgtattttatgacCCAGCTGGTGTTGCTGATCCTCTCAATCTCCAGTTTTCCTGCATATTATATTTGACATTTCAAAAATTTGCTAGAAGTTTACCAGTGTAACTTAAGTTTAAGCACCTTAGAGTATGAATTAACTGCAGATCATGACTAGACAACACAAttttcctgtgtgtatgtgtaatcgTTCAGTCTGTGGGCCAGTGCAATTTCCCATTTGCTGCCTGGACACTGAAAGCATATGGTCCAGTGCAGATTACAGTAAATCAGTAGATAAAGCTATACACGTATCCTGATTATCCTTCCGGGTTGGGAAGTTgcaccatttctttttttttttttatccaggaACACTACAATGTCTTCATGGGTGTCACTGTAGCTGATTgataatgtatatttatttttaggttGTATATTTTTTGCCTTAGTAGAGAatttataaagtatatatatatatatatatatatatatatataaataaggtGGAGGGCATTTTTGCATGACAGACAAGATacatagttatatttatttaaatgtaattataataacaCAGTGTTTTTTGTACATAGGTTTCATCATTATATGATTGTGTATGTGACTAATGATCTGACCTTCAAAATTAGTAACACTGGATTTGTGGTAACTAAAACTGCACAAGattttattagtattaaatAGATTAGTATCACATTGTGTTGTTTGAAtgttcttttatgtttttagaTATAAGgacataaagaaaataaaagagcatTGCTGCTTA

Function

symbol description
sema3ga Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Acts upstream of or within neural crest cell migration. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in caudal tuberculum; head; hindbrain; pharyngeal arch; and retinal ganglion cell.

NR:

description
PREDICTED: semaphorin-3F-like

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916956.2 True 3950 mRNA 0.46 19 12010073 12033492

Neighbor

gene id symbol gene type direction distance location
tspy LOC108265788 coding upstream 9303 11996043 ~ 12000770 (+)
suv39h1b suv39h1,suv39h1b,LOC108265881,LOC108442234,LOC107550505,LOC107679310,LOC107591797 coding upstream 52670 11947451 ~ 11957403 (+)
taf10 taf10,LOC106572212,LOC107679390,LOC107711978,LOC107591795,LOC107550511,LOC107707678 coding upstream 100069 11906748 ~ 11910004 (+)
efhd2 efhd2,LOC107711975,LOC107591793 coding upstream 105816 11882246 ~ 11904257 (+)
LOC113530451 LOC108266054 coding upstream 133985 11861457 ~ 11876088 (+)
stk38a stk38,LOC108265501 coding downstream 43019 12076511 ~ 12096739 (+)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458 coding downstream 69728 12103220 ~ 12187629 (+)
atp5pb atp5f1,LOC107668113,LOC107679218,LOC107711984,LOC107731279 coding downstream 216017 12249509 ~ 12257259 (+)
eps8l3b LOC108265744 coding downstream 224084 12257576 ~ 12274064 (+)
gnat2 gnat2,LOC108265815,LOC108442114,LOC102236489,LOC108236782,LOC107390790,LOC107591823,LOC103467179,LOC107679180,LOC106946560,LOC107731158,LOC107668040,LOC107550493 coding downstream 281412 12314904 ~ 12322876 (+)
G131061 NA non-coding upstream 292188 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 458042 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 650693 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 1061727 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 1093448 10916337 ~ 10916625 (+)
G131279 NA non-coding downstream 183512 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 192660 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 486402 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 656675 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 667220 12700712 ~ 12701501 (+)
foxp3a LOC108265789 other upstream 14221 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 296041 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 313282 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 376229 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 1135947 10870119 ~ 10874126 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 163101 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 566206 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1671674 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1856912 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1916445 13949937 ~ 14022687 (+)

Expression


Co-expression Network