wnt2bb (wnt2b,LOC108425044,LOC107562779,LOC107669677)


Basic Information

Item Value
gene id wnt2bb
gene name wnt2b,LOC108425044,LOC107562779,LOC107669677
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10013340 ~ 10031188 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919256.2
cctccCACCCGTACAGCTCAGTGCTCCAGTatcatagagagagagagagagagagagagagcaggggaTAAGAGATACAGTACTGATGGCAGAGAGGAAGGTTCTCGCCAGCTGTTATTTGTTTCACGGCTGCAGGAAGGCCATCACACCTCGCAGGAACGGACACACACTTGGCCGGAGGACGGGAAGAGCGCGCGCGCTGCTGCCTGCACACGCGTCCTGCGCTCCACTGAGACCTTTATAACGATTTCAAAAAAAGGAGgtgggagaagaaaaaaaaagaaagtgcgagagacagagagagagagagagaggaaacgcTTCCTCCAGCGCTCTGGCTCGGATTATCTCTGGTGCATGTGCCAGCTGCTGGGGAATACTTTTAAATGGCGCGCGGCAAGAACCGATCAGAGAGTCAGCAGCCGAGCGCGTGGAGCGAGCAGCCGTGATCAACATTCCCACACGTCCTCACAGCGCAGGAAGCTCTCCCGCGGACGCTTTATTTGTGCCGAAGTGTTGCGCACTGGAGGACAGACTGAGCGATGTTTGCTTTTAGTAAGGGTCACGGCTCGCTCAGGATCCTCGGGGACTCCACCGCGCGCGCCACCGGCGCTTCCTCGCGCCTCTACTGCGCATttatcctcctcatcctcatcctcacacCCCGCGTGGACTCATCCTGGTGgTACATTGGCGCTCTGGGCGCGCGGGTAATATGTGATAACGTGCCAGGTCTGGTGAATAAGCAGAGACAGTTGTGTCAGAAGTATCCAGACGTAATGCAGTCGATCAGCGAGGGAGGAAAGGAGTGGATCCGTGAGTGTCAGCACCAGTTCAGACACCATCGCTGGAACTGCAGCACAATCGAGCGCGACCACACTGTCTTCGGCAGGGTCATGCAACGCAGCAGTCGGGAGGCCGCCTTTGTGTACGCAATCTCCTCGGCGGGTGTTGTGTACGCTATTACCCGTGCTTGCAGCCAGGGGGAGTTAAGGACGTGCAACTGCGACCCGCACAAGCGTGGCAAAGCAAGAGACGAACGAGGCGAGTTCGATTGGGGTGGCTGCAGCGACAATATTAACTACGGGATAAAGTTTGCTAAAGCCTTCGTAGACGCCAAAGAGCGGACAGTGAAGGATGCACGAGCACTTGTGAACCTTCATAACAATCGCTGTGGAAGAATGTCAGTGAAACGCTTTATGAAGCTAGAGTGTAAGTGTCATGGCGTCAGCGGCTCCTGCACCTTAAGGACTTGCTGGTTGGCGATGTCCGACTTCAGGAAGACCGGAGATTACCTCCGCAAAAAATACAATGGTGCCATTGAAGTCACCGTGAACCAAGATGGAGCGGGATTCACCGTGGCTCACAAGGACTTCCGGAACGCCACCAAAAATGATCTGGTGTACTTCGAGAACTCACCTGACTACTGCTTAATGGACAAAGCTGCAGGTTCTTTAGGCACAGCTGGTCGCATCTGCAACAAATCATCTCGAGGAACAGATGGCTGTGAGGTGATGTGCTGTGGGCGAGGCTACGATACAACACGTGTGAAGCGCATCACCAAGTGCGAATGTAAGTTTAAATGGTGCTGCGCTGTTGAGTGTAAAGACTGCGAAGAGGCTGTGGATATACACACCTGCAAAGCACCGAAACGAGCCGAGTGGCTGGACCAGACCTGAGACCTGGCCAAGTTCTGTCTTCCTTCGTCCTCCTCAAGATCTCCTGTGAACGATGGTATTCTGGGATATGATGTCCATCCTTCATGGCTCCTCTCCCTGATCCTTATTCCTTGTTGCATGGCTTTATTATAACTCTCTGTGAAAGCACtacaactaaaaaaaactgcatttcccATGAGCGCCTTGCACACTATGTCCAACCCGGCACATTACTCTgcctctctcttgctctttatTTTATGGTATTGAATTGGGCAGAGGACACTAAGAGTGTAAGAATGAGCTGCGTTGCAACTGTGAACTTTTTTGTTGGTGGTTTTTATGTATTGTTTTCTGTGAATTTCCAAAGATATGTTGTTCCTCAAGTAGTGTTTTGTGCTgcatttaaaatgctttaaggACTTTATAAAAGAACTCTAGGCCTCACTATAATACCACTTACTTGTTATTGAGAACACAACTAtgtgctttgtaccagtcatACCCCTATAACATTGTCTCGCTTTGACTGATAACGAATGTGAAAGGAGGCAGCAGCATAAAGAGAAGAAATGGCCTAGAGCTTTGCACACTTTCCAGATATGGCCAGATTTTGGACAGAAGACCTCAAAGGATTTTACAGAACTTTTTCTGAaagatgaagagacagagagagtgggagtttaaaaaaaaaggtctaaatATAAAGATGAGCCTGCACTAAGAACACTATCTaaccaaaaatgtaaatattaatgcataaaTTGCAATAAAAGGAAATGCATAATTATGAGCATTAACACGAAATATGTGGTCCAAAACATCCGTTCAGACTGAAAGTACTGGTTTGATTTATAGTGGAATTATGGTGTCACATAAATGCTGATGTTTTGGCTCTTCTGTATAACTTCTGTATACTGCAttgatatttaaacaaaagTTCACATAAAAAATATGAAGTATTAA

Function

symbol description
wnt2b Predicted to enable cytokine activity and frizzled binding activity. Involved in animal organ development and canonical Wnt signaling pathway. Located in intracellular membrane-bounded organelle. Part of collagen-containing extracellular matrix. Implicated in congenital diarrhea. Biomarker of endodermal sinus tumor and teratoma.

NR:

description
PREDICTED: protein Wnt-2b isoform X2

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00182 WNT2; wingless-type MMTV integration site family, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919256.2 True 2624 mRNA 0.48 6 10013340 10031188

Neighbor

gene id symbol gene type direction distance location
cttnbp2nlb cttnbp2nl coding upstream 48244 9934292 ~ 9965096 (+)
ddx20 ddx20,LOC107556298 coding upstream 354781 9651871 ~ 9658559 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding upstream 376317 9624300 ~ 9637023 (+)
LOC117597805 LOC108265689 coding upstream 392384 9615604 ~ 9620956 (+)
LOC117597803 LOC108265688,LOC108265689 coding upstream 398645 9610793 ~ 9614695 (+)
mov10b.2 LOC108265909 coding downstream 25041 10056229 ~ 10077521 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding downstream 137197 10168385 ~ 10279934 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding downstream 482251 10513439 ~ 10541772 (+)
kazna kazn coding downstream 600293 10631481 ~ 10681269 (+)
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding downstream 712537 10743725 ~ 10790914 (+)
G130021 NA non-coding upstream 297472 9715656 ~ 9715868 (+)
G129996 kcnd3 non-coding upstream 341005 9672067 ~ 9672335 (+)
G129971 NA non-coding upstream 410808 9600195 ~ 9602532 (+)
G129849 NA non-coding upstream 517610 9450562 ~ 9495730 (+)
G130231 NA non-coding downstream 2162 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 54373 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 488252 10519440 ~ 10524699 (+)
G130412 NA non-coding downstream 515791 10546979 ~ 10549067 (+)
G130459 NA non-coding downstream 722612 10753800 ~ 10762869 (+)
LOC113532719 LOC108265185 other upstream 347647 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 542061 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1700684 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 2041591 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 2151770 7856004 ~ 7861570 (+)
G130390 NA other downstream 326758 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 512731 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 651890 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 675531 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 838931 10870119 ~ 10874126 (+)

Expression


Co-expression Network