LOC113530463 (LOC108266055)


Basic Information

Item Value
gene id LOC113530463
gene name LOC108266055
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11854167 ~ 11857253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920481.2
GGTGGAATTAGGGTTTTGTTATTAAGTATATAAAGTGCAAACTTGCAGCAGCTACTGTACATTCAACATGAAGCTCTTGGTCTTGGCTTTGTTCGTTGTTGGCGCCTATGGATGTGGGCGGCCCACTTACCCACCCATTGTGAGCAGGGTGGTTGGAGGTGATGATGTTAGGGCTAACAGCTGGCCCTGGCAGATCTCTCTCCAGTACCAGAGCTCGTCCAACTTCTACCACACCTGTGGAGGAACCCTGATTGCTAACCAGTGGGTTCTTACTGCAGCTCACTGCATCAGCAGCAGTCTAACCTACAGAGTATATCTGGGCAAGCACAGCCTGAACACTGCCAATGAGGCGGGCTCCATTGTACTGGGTGTTCAGAAGATCTTTGTCCATCCACAGTGGGACTCCCAGAGAATCAGGAATGACATTGCCTTGATCAAGCTGGCGAGCCCTGTGCAGTATTCCAGCAAAATCACGCCTGCCTGTTTGCCTGCGGATGGACTGGTGCTGCCCAATGGCTACTCCTGCTATGTCACTGGCTGGGGCCGTCTTTGGAcTGGAGGTCCCATTGCAGATATCCTGCAGCAGGCTCTGCTCCCCATAGTTAGCCATGATATCTGCAGTAGGTCTGACTGGTGGGGCTCACTGGTCACTACTCAAATGGTGTGTGCTGGAGGAGATGGTCAGCTGGCCAGCTGCAATGGTGACTCTGGTGGCCCTCTGAACTGTCAGAGATCTGATGGCGCCTGGATGGTTTACGGTGTGGTAAGCTTCGGCTCCAGTCTGGGCTGCAACTACTACAAGAAGCCTTCCGTTTTCACCCGTGTTTCTGCCTACATCCCCTGGATCAACAATGTAATAACTGCAAATTAAACTGGAGTGCTTCATcagcaaataaaaatgtcagctCAATAAAAGAGATTACTTGCA
>XM_026920490.2
GGTGGAATTAGGGTTTTGTTATTAAGTATATAAAGTGCAAACTTGCAGCAGCTACTGTACATTCAACATGAAGCTCTTGGTCTTGGCTTTGTTCGTTGTTGGCGCCTATGGATGTGGGCGGCCCACTTACCCACCCATTGTGAGCAGGGTGGTTGGAGGTGATGATGTTAGGGCTAACAGCTGGCCCTGGCAGATCTCTCTCCAGTACCAGAGCTCGTCCAACTTCTACCACACCTGTGGAGGAACCCTGATTGCTAACCAGTGGGTTCTTACTGCAGCTCACTGCATCAGCAGTCTAACCTACAGAGTATATCTGGGCAAGCACAGCCTGAACACTGCCAATGAGGCGGGCTCCATTGTACTGGGTGTTCAGAAGATCTTTGTCCATCCACAGTGGGACTCCCAGAGAATCAGGAATGACATTGCCTTGATCAAGCTGGCGAGCCCTGTGCAGTATTCCAGCAAAATCACGCCTGCCTGTTTGCCTGCGGATGGACTGGTGCTGCCCAATGGCTACTCCTGCTATGTCACTGGCTGGGGCCGTCTTTGGAcTGGAGGTCCCATTGCAGATATCCTGCAGCAGGCTCTGCTCCCCATAGTTAGCCATGATATCTGCAGTAGGTCTGACTGGTGGGGCTCACTGGTCACTACTCAAATGGTGTGTGCTGGAGGAGATGGTCAGCTGGCCAGCTGCAATGGTGACTCTGGTGGCCCTCTGAACTGTCAGAGATCTGATGGCGCCTGGATGGTTTACGGTGTGGTAAGCTTCGGCTCCAGTCTGGGCTGCAACTACTACAAGAAGCCTTCCGTTTTCACCCGTGTTTCTGCCTACATCCCCTGGATCAACAATGTAATAACTGCAAATTAAACTGGAGTGCTTCATcagcaaataaaaatgtcagctCAATAAAAGAGATTACTTGCA

Function

NR:

description
PREDICTED: chymotrypsin-like elastase family member 2A isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01346 CELA2; pancreatic elastase II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920481.2 True 928 mRNA 0.51 8 11854167 11857253
XM_026920490.2 False 925 mRNA 0.51 8 11854167 11857253

Neighbor

gene id symbol gene type direction distance location
alas2 alas2,LOC108265738,LOC108441648,LOC107555603,LOC107745783,LOC107549233,LOC107731137 coding upstream 4180 11841583 ~ 11849987 (+)
itpr3 itpr3,LOC108441646,LOC106572092,LOC107731245 coding upstream 14283 11803048 ~ 11839884 (+)
cry3a cry1ba,LOC108265656,LOC108441644,LOC107668038 coding upstream 62994 11766040 ~ 11791173 (+)
col2a1a col2a1a,LOC108265655,LOC107668081,LOC107585898,LOC107731244 coding upstream 90576 11738339 ~ 11763591 (+)
spryd4 spryd4 coding upstream 137493 11714943 ~ 11716674 (+)
fhad1 LOC108266054 coding downstream 1215 11858468 ~ 11861880 (+)
LOC113530451 LOC108266054 coding downstream 4204 11861457 ~ 11876088 (+)
efhd2 efhd2,LOC107711975,LOC107591793 coding downstream 24993 11882246 ~ 11904257 (+)
taf10 taf10,LOC106572212,LOC107679390,LOC107711978,LOC107591795,LOC107550511,LOC107707678 coding downstream 49495 11906748 ~ 11910004 (+)
suv39h1b suv39h1,suv39h1b,LOC108265881,LOC108442234,LOC107550505,LOC107679310,LOC107591797 coding downstream 90198 11947451 ~ 11957403 (+)
G131061 NA non-coding upstream 136282 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 302136 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 494787 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 905821 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 937542 10916337 ~ 10916625 (+)
G131279 NA non-coding downstream 359751 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 368899 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 662641 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 832914 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 843459 12700712 ~ 12701501 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 140135 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 157376 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 220323 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 980041 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 1112742 10706719 ~ 10741425 (+)
foxp3a LOC108265789 other downstream 121933 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 339340 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 742445 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1847913 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 2033151 13890404 ~ 13948808 (+)

Expression


Co-expression Network