spryd4 (spryd4)


Basic Information

Item Value
gene id spryd4
gene name spryd4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11714943 ~ 11716674 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921446.2
TGTTCCTGTGACTCGGCTGGGGAACTGTGAAGGAGAAGCTCATGGGCCATGTGGAACAAGATGGCGTTGTCATCGCGTTTGGTTTTGTGCAGTCGCTTTGGCCGAACCGCAGGCGCTGTCCTGCTCATTAATAAACAACCGACAGTCCCGCTTACCTGCAGATGTTATGTTGCCGCTAGCCACCAAAATCagctgcagttcaAACTGGATGAGCGTACGGCTCACAGCAGTCTCGATCTCTTCAAGAAAGACACAGGTGTGATTTATCGAATGCTGGGCCTAGACCCGAGCCATGTCCAGGATTCCCCTCTGCGTTTTCGGGACTGGGCCGTCGTGTTTGCTGACAGCCATGTTGACTCGGGACGTCACTACTGGGAAGTCACGGTTAAAAAGTCACAGGAGTTTCGCATTGGTGTTGCAGAAGCGGCGATGCCTCGTGATGAGTGCATTGGCACAAACTCGTCCTCGTGGGTCTTCGCCTACATGCACAGTAAGTGGTACGCCATGACCACCAACAAGCAGGTGCCCGTGTTGCTGGTGGGGAAGCCGGATCGATTGGGACTGCTCGTAGACTTTGAGGCTGGCAAGCTCAGTTTAGTAGATCCCCAGATTGCAAAGGTAGTGCACTCGATAAAGACTCATTTTCCCTCGCCGATCTGTCCAGCTTTTGCACTGTGGGATGGTgaaatactcacacactctgggTTGGAGGTGCCATCAGGGCTTAATTAGAGTTCACACATGCCTCCTTCAACCTTTTTTTGGATCAACATAGCAATAAGCAGTCTGTGTACCAAGTGAAAAGCAGTACCTCATGTCCCTGGAATATTCAGAGTTAACTCAGAGACTAAGCAGAATGTTTAGCCAGATCTCCAAATAAACCTTGCTGGGATAAAAATGCTGATGAGTAATAGGACTGATTGTGGctataaatgaaacattatttgACACATTAATACATGTAACATGTATCAATGtttatgtgctgttatatgatgGGTTCAACAAAACTCTTACATCTTCTACTGATTCCAGGAGATAAATGTATGGCATGTACATACCATCTCTCTATTCATGCTATTTCTCTGTGTGCATTTTCATGATATGTGTTCAATAAAAGAGACTGTGTAGCAGTGA

Function

symbol description
spryd4 Orthologous to human SPRYD4 (SPRY domain containing 4).

NR:

description
SPRY domain-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921446.2 True 1137 mRNA 0.47 2 11714943 11716674

Neighbor

gene id symbol gene type direction distance location
magoh mgn,magoh,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding upstream 15575 11696883 ~ 11699368 (+)
LOC113538016 NA coding upstream 106386 11597781 ~ 11608557 (+)
si:ch211-198n5.11 LOC108265604 coding upstream 118330 11588824 ~ 11596613 (+)
cdkn2c cdkn2c coding upstream 267059 11436385 ~ 11447884 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC103028496 coding upstream 426025 11219551 ~ 11288918 (+)
col2a1a col2a1a,LOC108265655,LOC107668081,LOC107585898,LOC107731244 coding downstream 21665 11738339 ~ 11763591 (+)
cry3a cry1ba,LOC108265656,LOC108441644,LOC107668038 coding downstream 49366 11766040 ~ 11791173 (+)
itpr3 itpr3,LOC108441646,LOC106572092,LOC107731245 coding downstream 86374 11803048 ~ 11839884 (+)
alas2 alas2,LOC108265738,LOC108441648,LOC107555603,LOC107745783,LOC107549233,LOC107731137 coding downstream 124909 11841583 ~ 11849987 (+)
LOC113530463 LOC108266055 coding downstream 137493 11854167 ~ 11857253 (+)
G130960 NA non-coding upstream 162912 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 355563 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 766597 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 798318 10916337 ~ 10916625 (+)
G130611 NA non-coding upstream 803568 10911164 ~ 10911375 (+)
G131061 NA non-coding downstream 158 11716832 ~ 11717885 (+)
G131279 NA non-coding downstream 500330 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 509478 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 803220 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 973493 12690167 ~ 12712485 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 911 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 18152 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 81099 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 840817 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 973518 10706719 ~ 10741425 (+)
foxp3a LOC108265789 other downstream 262512 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 479919 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 883024 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1988492 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 2173730 13890404 ~ 13948808 (+)

Expression


Co-expression Network