cttnbp2nlb (cttnbp2nl)


Basic Information

Item Value
gene id cttnbp2nlb
gene name cttnbp2nl
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9934292 ~ 9965096 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922828.2
GGAATGCTGTAGCGTACAGCTCATAACAGGACAGTTGATGCATTAATAGCGGGAATATTTTGGGAATTGATGAACCACGATTGGAGCGTATGAAGccCAGCAGAATGGATGTTGAGACTCTGAGTAAAGCAGAGCTGCTAATGCTGCTGAGCATATTGGAGGGAGAGCTGGAGGCTCAGGACCTTGTCATCCACACTCTCAGGGCACAGCAGCGAGACGCGTTTGTGCAGGAGCGGTACGGGcgatatgatctcagtgacccCTTCATGGCTCTTCAGAGAGACAACGAGGCAATGCAGGGTCACGAGCCGGGTCAAACTCAGGCTCGGGCTCATGGTGGGAGAGGCCAGGTCAACCCAAGCCCACTGGCTGTCCTTAAGCTGGTGATGAGCCACTGCAAGCGCATGCAGGAGAAGATGATGGCACAGCTAGCGGCGGCTGAGAGCAGACACAGACGgGTTATTGCTGACCTGGAGGAAGAGAAACGGCGCCATGCCCAAGACACGGCTGAGGGTGATGATGTCACATACATGctggaaaaggaaagagagcGACTACTGCAGCAGTTGGAGCTGGAGAGGGCGAGGGCCGAGCGTCTTGAGCGCGAATGTCACTCGCTTTCCACCCAGGTGGAGGAGAACCaggcacagcagcagcagctctctTCTAACCTGGCCAAGGAGTGCCAGCGTGCCAGTGCCCAAGCTCAGGAAGAGAGTGAGCGTGTTGCCCAGCTGTGCAGGCAGCTGGAGCAGGAACGCAGTGCCACGCAGAGTCTGCAAGCAGAGCTGAAGCAGGAGAAGACACATGCCCTGCAGACGGAGGCCAGAGTCGAGCACCAGCTGGCCGAGTTCGACACGGAGCGTGAGCAGATGAGAGCGAAGCTGCGCAAGGAGGAAAGCCACAGCAGAGAGCTGCAGGAGCTGATCGAGCACCTCAGGAAAGAGCTGGAGGAtatgaaggagaaggaggaaagatggagggaaaaagtggaggaggaaaagaaagccgCAGAAAAGCAGCCTAACGCAGCATCAGCTTCTGCAGCCTGCCAGACTGAGCCAGATGGGAAAGTGGTCAGCACTGAAAAATCTCAACGGCTCAGACTCAACGGGCATCAACTGCGTAAAGAGAGCGAGTCTTCAGAAGAGAAAAGCACTGAAAACGGAGGGGTAGAGAATGGAGGAGCTCTGAGCTCACCTGTGCATGCGCTTCAGTCTCTTTCTCCCAGCAGCACGGCCTGCTCATCACTGTCCTCCTCGCCGTGCTCCTCGCCCGTACTGGCCAAGCGCTTGGCGTCATTGGGCACCTGCAGCCCCACATACCCATCATCTTACCAGGCGAGCGTGAACCAGCGCTTCCAAGCCGCCAGACACAAGTTCCAACAGCAGGCTGAGCAAGGTGGAGCGATGCCCCTGTCGCCTCGCGAGCTTTCTCCCACCTCTACACCAGTGCCTCCTCTGTCCGAGAACTCCACTGCCAAGCAGATGGCTCGCAACACTGTCACACAGGTGCTGTCGCGCTTCACCAGCCAACAGGCAGCAGGCAAATCACCCGCTCCTAACAGTTCACCGTTTGGCACTGATTACCGTACACTTGCAACAGCCTCCTCACCCACTAGCAAAGGGCCGTGCACTCTGTCACCTGGCATCCGCTCACCCATAACCCCCCGGGGGGAGAGAAGCTTTGCAGCCCCGGTAGCCCAAAAGAAGCCTGGCACAAACCAGAATCCAGGGTCACCCGTATCTGCATCCTCGCCTCGCTCTTCTCACTTCCCCGAGCTCTCGAATAGCTGTGGCATCAGCAGCACACAGGAGGGCGCTAAAGAGCTCGACCTGCTCATGTCCAAATCCAGCTAACCACTAACAAAAGCCAAGGCTTCACCACTTAATGTCCTTTTAAATTTAGCACTAGGCTTAATAGAAAACTAGGGTTCTGGaaactgtgtgcttcagtgaAGTCTGAAATGGCTTGAAGCACtaagcaaaacaaaaagaatataACAGAAAAAACAACTCGCACATACCAAACCTGCAGATTAACTAATGAGTCAAatcaaacactgattttttttttgagtgttggAACAGTGGAGCTCACCAAACTATCCAAATCCAGCTAACCACAGGCCAAATCCACAAATAGCTCAAATTAAAGGGCCTAATCCATACGCAGCCTCTCTTGGCTCCACTATTATCCCTTCTCTAACAGATTACAGAGCACTCTAAACACTCAAAGCACTCACACTTGCACTCCTGTATTCCTTTACTCTCCAAATCCACACATAAAAAAAGATCTTTGCAACTGAGGAGCAGAGCAGTGGACATGGGCTCTTCATTCTACTGTGGACACTACACAAGGAagacaacatttatttaaatttccttttttttaatgaatacattattatattaacatCTTGTATAttgagatattttatttatcccTATCATGTTCCTCTCATACCACGCATATTCTAAGTGGAAAAAGGAAGaagtgttataaatgttaaaaaaaaaaactgactttaAATTAAACAGCAATAATTAATGATGCATTCT

Function

symbol description
cttnbp2nl Enables protein phosphatase 2A binding activity. Acts upstream of or within negative regulation of transmembrane transport; negative regulation of transporter activity; and protein dephosphorylation. Located in actin cytoskeleton.

NR:

description
CTTNBP2 N-terminal-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922828.2 True 2561 mRNA 0.51 5 9934292 9965096

Neighbor

gene id symbol gene type direction distance location
ddx20 ddx20,LOC107556298 coding upstream 275733 9651871 ~ 9658559 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding upstream 297269 9624300 ~ 9637023 (+)
LOC117597805 LOC108265689 coding upstream 313336 9615604 ~ 9620956 (+)
LOC117597803 LOC108265688,LOC108265689 coding upstream 319597 9610793 ~ 9614695 (+)
LOC117597804 NA coding upstream 331804 9599821 ~ 9602488 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding downstream 48244 10013340 ~ 10031188 (+)
mov10b.2 LOC108265909 coding downstream 91133 10056229 ~ 10077521 (+)
si:ch211-254n4.3 fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776 coding downstream 203289 10168385 ~ 10279934 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding downstream 548343 10513439 ~ 10541772 (+)
kazna kazn coding downstream 666385 10631481 ~ 10681269 (+)
G130021 NA non-coding upstream 218424 9715656 ~ 9715868 (+)
G129996 kcnd3 non-coding upstream 261957 9672067 ~ 9672335 (+)
G129971 NA non-coding upstream 331760 9600195 ~ 9602532 (+)
G129849 NA non-coding upstream 438562 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 479883 9453034 ~ 9454409 (+)
G130231 NA non-coding downstream 68254 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 120465 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 554344 10519440 ~ 10524699 (+)
G130412 NA non-coding downstream 581883 10546979 ~ 10549067 (+)
G130459 NA non-coding downstream 788704 10753800 ~ 10762869 (+)
LOC113532719 LOC108265185 other upstream 268599 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 463013 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1621636 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1962543 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 2072722 7856004 ~ 7861570 (+)
G130390 NA other downstream 392850 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 578823 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 717982 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 741623 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 905023 10870119 ~ 10874126 (+)

Expression


Co-expression Network