kcnc4 (kcnc4,LOC107731196)


Basic Information

Item Value
gene id kcnc4
gene name kcnc4,LOC107731196
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12478618 ~ 12509666 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922840.2
GCCGCTGTTGCCGATGCTCAATCCGTCCCTCTGGGCTGGGGCTGTGCTGAGGGAGGATACTTGAGGAGATGCAACAGATCTCAAACCCAACAAACTGCCATCGACTCATCCTTCTCCTTCaacacagactgaacacaaaaCCATGGAGGACTTTTATCACGCAGGTTGAAGACGATCTTGGTGATCGCGATCAGTGCATTTCTTAAAACTTGGACACATCCAGTAGGTAGCCTATTTAGAGGCAATGCAAACGCAGGCGGTGTTCTTGGATAACAGGTGGTTTGTCATGTCTTCAAGGCCTTAGCGACCGTTATGCCACACTCACGACACCGGTGTCGATAACAGCAAGTCCTTCTACTAGTTCCACTTGTCTTGTGATGCTCTAAATCAGATAAGGGAGTGACCGGCGGCTCGCCTCTCCATCCAAATCTATGATCAGCTCGGTGTGTGTTTCGTCTTACCGCGGGCGCAAGTCGGGCAACAAACCTCCGTCCAAATCATGTCTGAAGGAAGAGATGGCCAGGGCCGAAGACTCGGACAAGATCATCCTGAACGTGGGCGGCACGCGCCACGAGACGTACAAGAGCACGCTTAGGAGTATCCCGGGCACGCGCCTCGCCTGGCTAGCCGAACCGGAAGCGCAGCTGGACGCCAACGCGGAAGCAGGACAAGCGCCCGGCACCAACGAGTTCTTCTTCGACAGGCACCCGGGCATCTTTGCCTACGTGCTGAACTACTACCGGACCGGTAAGCTTCACTGCCCTGCGGACGTGTGCGGCCCTCTGTTCGAGGAGGAGCTCGCCTTCTGGGGCATCGATGAGACAGATGTGGAGCCATGCTGCTGGATGACTTACCGGCAGCACCGCGACGCAGAGGAGGCGCTGGATATCTTTGAGCCGCCCGATCCTGAGGATGTCGACGACGATCGGGATGTACCGCGGCGCTTCGGTATCGAGGACTGTCCCGAGCGCTCCAGAGGCTGCTTTGAAGTCTGGCAGCCCAAAATCTGGGCTCTGTTCGAGGACCCGTACTCATCCCGCGCCGCGAGGATCGTtgcctttgtctctctctttttcattttggtgTCTATCACCAACTTCTGCCTTGAGACACACGAGGCCTTCAATGAACTCCAGAACCGTACCAAAGTGATTTCTGATGGCAACACTACCAAAGTGATGTCCACTCTGGAGGTGGTGACGAACCCTGCACTCACGCTGGTGGAGGGCATCTGTGTGGTGTGGTTTACGTTTGAGTTCCTGGTGCGCATCATCTGCTGTCCTGACAAGCTGCTCTTCATCAAGAATTTGCTGAATATCATTGACTTTGTGGCCATTCTGCCCTTCTACTTGGAGATTAGTCTGAGTGGACTCTCCTCCAAAGCCGCCACAGATGTGCTTGGATTCTTGCGAGTGGTGCGTTTTGTGCGGATCCTGCGGATCTTCAAGCTGACCCGTCACTTTGTAGGGCTGAGAGTGCTTGGCCACACACTGCGTGCCAGTGTTAATGAATTCTGCCTCCTCATCATCTTTCTTGCTCTTGGTGTCCTAATCTTTGCTACAATGATCTACTACGCAGAGCGCATTGGGGACTCTGATGATCCGTACACGAACAGTCACACTCATTTCAAGAACATTCCGATCAGCTTCTGGTGGGCTGTGGTCACTATGACCACACTGGGTTATGGGGACATGTATCCTCAGACCTGGCTGGGTATGATGGTTGGTGCCCTGTGTGCATTAGCAGGCGTTCTAACCATTGCCATGCCAGTCCCTgttattgttaataattttggGATGTACTACTCCCTGGCCATGGCAAAGCAGAAGCTGCCCAAGAAGAGGAAGCGCCACCACCGAAACCCAGACATGGTGCTGGACTCAGCCTCATTTGGAAAATCTGAGACCAACTCGCACAGGAATAGCACCCAAAGTGACACATGCCCTCTTGCACCTGAGGAAAACATTCCAAGGAACCGTTCAGaCTCAAAGCAGAATGGCGATGCTAATGTAGCTCTATCAGAGGACGAGCCGCTCTCTCCCAGTGAGAGGTGGTCCCTCCGCCGCTCACACAAGCGTGACAAGTGCAAGAAAGAGGGTACCTCCTTCCTCCTGACTTCTGGAGACTTTTCCTGCAGCACTGATCCCACTAGCTGTACAGAGAGCTGCAAAGACGCCCTTACAGCCGCAGCCAGCTACGGCCAGACAGAAGTGACTACGATGACGTGAAGTGACATGATTAGATGAACAGGAGAGATCCTATCCATCAGAGATCCTATCCATTTGTGTCTGTTGGACTTCAGTCTTTCATCCAGCAGTCCCAgccatacacactacacaagtCCCCTTTCTCTAAAGTACATCCCAGCATGTCTTTGCATGACCTCACTCTGTATGGCGTAACTTGACAAGTGTACTTAATATTTTGGGCACATCCCAActtgtgtgtactgtatgttgtCTTATCTGAAGTAATCACATTGCGGAAATCTTCATTCTCATGCATTTTCTTTGATCTgaagacattttgaaatgttcacATGTTTGTGAGCAGCAACATTTTGAGGGATGAGGTGTATAACTTCAGTgtcatattttcaaaaatagcATAGTACAATTGATAGTCGCATAAGGCAGGAATCCAGGAGCCTGTGTTTGGCAAATACTTCATGAAATCTTTGTATTTAGTAGATGTAGCTCTATAAATTCTCAACCTCTTCATGATACAAATTGGGAGGTTGGATTTGTTTTGACTAAAGAATAACATTTGGAACAGGTCTGTATCTGATTAGCATCATGCCAGAGCTTTGCTGTAGAGACAGCAAAACACCCTGGAACTAAAGAAGGTGCTTATAGAAGGTGCTTTTGTTTCTGGGAAAATTCTTAGTCACTTGAGTCACTTAGTCACATTTGAGTAGCCATTTCCAAGTTATTTTGATTCAAGACATTTGTTCTCCTTTTAACATGTTGATTGGGATTATTTAtggattaaataaaatgcacctttattttaaaaagtatcaTTTTATGGATATAAACTAAATGTCCAGCATCCAAACAGTTTATCACTTCATTTTCTATATCCTTTTGTAATGTCACTGGTTGAAAGGGGACCAAGCAccattacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtatacacccTTGGTGGACTGCCTAAACCTCCTTTACTGTATACGTGCTATATTCTGTTCTCGCTGTGCCTACCGTcatgtaaagaagaaaaaaaaatcatattttgacaCATGGacagaataatataatatataaagtatagTCTCTAAAATAGGTGAAAGAAgtcttttagtctttttttcttattagtcTGCCATAGTTGCCTTATGTTTATGAACCAAACAAatgttagttttattttaacatacaaccccacatttaaatgataaaaatactgtttgtaaataaaagcacaCTTGTATGTAGCACAGTATGTTAGGCCATTGCGTATATTATAGAGTTAGAATAACCATGCCACAAATGCATTATATCATATTATGGTAACTgtgtataaaacataaacagagattattttttctattgtatttatgttttttcgCTGCCTCCCCCagtcacctgtgtgtgttttggggaaaTGGCTTCTCGTATAGAATTGTATGGTACCGTGCAGTAACTCTTAATAAAACTGTATGATGTG

Function

symbol description
kcnc4 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to several human genes including KCNC4 (potassium voltage-gated channel subfamily C member 4).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily C member 4 isoform X1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04890 KCNC4, KV3.4; potassium voltage-gated channel Shaw-related subfamily C member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922840.2 True 3714 mRNA 0.46 6 12478618 12509666

Neighbor

gene id symbol gene type direction distance location
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032 coding upstream 2868 12450275 ~ 12475750 (+)
nfyal nfyal,nfya,LOC108265435,LOC107668092 coding upstream 30634 12438112 ~ 12447984 (+)
sort1b LOC108265432,LOC108442120 coding upstream 45472 12414194 ~ 12433146 (+)
amigo1 amigo1 coding upstream 81958 12390255 ~ 12396660 (+)
trnad-guc_1 NA coding upstream 96548 12381999 ~ 12382070 (+)
alx3 alx3 coding downstream 77133 12586799 ~ 12597439 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 coding downstream 137023 12646689 ~ 12649107 (+)
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding downstream 141559 12651225 ~ 12654683 (+)
LOC113531715 LOC108265567,LOC108414659 coding downstream 149362 12659028 ~ 12662145 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding downstream 266260 12775926 ~ 12783157 (+)
G131282 NA non-coding upstream 252256 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 261404 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 760733 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 926587 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 1119238 11355449 ~ 11359380 (+)
LOC117597859 NA non-coding downstream 10228 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 180501 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 191046 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 202959 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 299457 12809123 ~ 12809738 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 248617 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 482766 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 764586 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 781827 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 844774 11622302 ~ 11633844 (+)
rbm15 rbm15,LOC107731203 other downstream 90032 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1195500 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1380738 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1440271 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1812506 14322172 ~ 14323450 (+)

Expression


Co-expression Network