si:ch211-254n4.3 (fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776)


Basic Information

Item Value
gene id si:ch211-254n4.3
gene name fam19a3,si:ch211-254n4.3,LOC108425093,LOC107669582,LOC106517667,LOC107711931,LOC107591764,LOC105928018,LOC107562776
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 10168385 ~ 10279934 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923227.2
CTTCTCCTCCGGTACGAACGCGCGCGCCAGACACGATACCGTTACACCTCCTCCGCCTTATATCTCCTCTCCCAGAAAACACAGAGACGCCGCGGGCGCGCGCGCCAGGGCTCGTGGCTGAACGGCTCGCGCTCTGGATTGATTCCGATTGATTACGCACccgaaaagcaaaaaaaaacaaaacaaaagcgcTGGAGCGAAGTTTGGCGCGTCGCGCGCGCGGTGACATGGAGAGGTAGAGCAGGACGCGGCGCTGCCACGCAACTTTTAAATCCTGCTCTGACTTTTTTGGATGTTTCTGAACGGACGGTATTCAGTTTCGCCTTGATCTGGCTGGTGTATTGTAATCGCAGCACTGCTGGGTGAATTTCAGAGGGACTGGAGAGCGGGAAGCGCGCGGCGGAGTGCATGGCCCGTGACAGAGGATACGAGCGCGCGCGTTATGTCCGGTAATGAAACAGCAATGAGAGCGGACTTTTCCCTGGAATAAACGCACGCGCCGGGCCAACAGaatgCGGGAGCGGgatgtacagagtgtgtgtgtgtggctgctgcTGCTCACCCTGGCCCTGCTGTCTCTCTGGGGGCGTCTGGCTCTGGCCTCTTCACACCGCAACCATATAGTGCATGTGAAGGCTGGGACGTGTGAAGTAATTGCGGCCCATCGCTGCTGTAATAAGAACAAGATTGAAGAGAGATCTCAGACTGTCAAGTGCTCCTGCCTACCTGGACAGGTCGCCGGGACGACCAGAGCCGCTCCATCCTGCGTCGATGCATCTATAGTAGCCCAGAAGTGGTGGTGTCAGATGCAGCCGTGTCTGGATGGAGAGGAGTGTAAAGTTCTACCAGATCTCACAGGTTGGAGCTGCAGTACTGGCAACAAGGTTAAAACGACAAAGGTAACTCGGTAGTGGAATGCTCCAGTCAGAGGAAGTGGAAGTAGATGAATAGGAAACAGAAAGACTTGCAGAAACAACTTCACCAATGCTAAAATAATACGGGAACCAAAGCAGCAAGGTCTCGTGTTCCACTCCATTCATACCAATGAGGATCACCACACTACTCAGctctcctccatcctccataCTTGCAATCCGCTGTCCTGAGCGTTTGCTGCAAACCTCGTCAGCACAAAAACAGGAATGAAAGACTGTCTGCTCGCTGGAATTCGCCATGCATCTGGATTATATCTTATGGTAGAATGCTAATCGCAGAGACAACTCACTGCTAACATCGgaactgttttatttgttcagtTTCTTCTTCCCCCAGCTGCTTAGACGTTCTGTTGTGTTatggttttctttcttctgtctgtCGATGCTTCCTGTAACCTCACATTTTGAACCTGAAAtgaaaagtgacatttttgcTTTCCCTTCTAAAACCTTGTTTCTTTCTCAGCATCTTAACTTCGGAAACTAGAGCTGCAGTCCTGGACTTACTGACCATCTGTAGATTATTTTGTTCCTTttctaataaagaaataataagtAAACTTTTTGACgcaaaagacaaataaaacagtaGATGTTATGGTATAATtctgtaaaagtgtaaaagattACAAGTATAAGATTCTTAGAtccagaagaaataaaaaaaatactctaacaGTTTTAATATTGATGTTTTTAACCAGCCTGGTAACTGCTATTGAGTACATGTGTCAGTattatctaaaataaataaagctatttcaaaggaaa
>XM_034306371.1
CCAGCCACTCCATGTAAATGAATACTCATGGCAAGGATTTTATTATGCCATTAACAGTTAATTTGagtctgtaattaaaaatatccGTCAGGCTAAAATGAACCAATCGGCCTTCCTCTGGGAGGATCACCTTGCCAGGGACAATACCACAGATGAACATGAAACGAGAGAAACAGAaatgCGGGAGCGGgatgtacagagtgtgtgtgtgtggctgctgcTGCTCACCCTGGCCCTGCTGTCTCTCTGGGGGCGTCTGGCTCTGGCCTCTTCACACCGCAACCATATAGTGCATGTGAAGGCTGGGACGTGTGAAGTAATTGCGGCCCATCGCTGCTGTAATAAGAACAAGATTGAAGAGAGATCTCAGACTGTCAAGTGCTCCTGCCTACCTGGACAGGTCGCCGGGACGACCAGAGCCGCTCCATCCTGCGTCGATGCATCTATAGTAGCCCAGAAGTGGTGGTGTCAGATGCAGCCGTGTCTGGATGGAGAGGAGTGTAAAGTTCTACCAGATCTCACAGGTTGGAGCTGCAGTACTGGCAACAAGGTTAAAACGACAAAGGTAACTCGGTAGTGGAATGCTCCAGTCAGAGGAAGTGGAAGTAGATGAATAGGAAACAGAAAGACTTGCAGAAACAACTTCACCAATGCTAAAATAATACGGGAACCAAAGCAGCAAGGTCTCGTGTTCCACTCCATTCATACCAATGAGGATCACCACACTACTCAGctctcctccatcctccataCTTGCAATCCGCTGTCCTGAGCGTTTGCTGCAAACCTCGTCAGCACAAAAACAGGAATGAAAGACTGTCTGCTCGCTGGAATTCGCCATGCATCTGGATTATATCTTATGGTAGAATGCTAATCGCAGAGACAACTCACTGCTAACATCGgaactgttttatttgttcagtTTCTTCTTCCCCCAGCTGCTTAGACGTTCTGTTGTGTTatggttttctttcttctgtctgtCGATGCTTCCTGTAACCTCACATTTTGAACCTGAAAtgaaaagtgacatttttgcTTTCCCTTCTAAAACCTTGTTTCTTTCTCAGCATCTTAACTTCGGAAACTAGAGCTGCAGTCCTGGACTTACTGACCATCTGTAGATTATTTTGTTCCTTttctaataaagaaataataagtAAACTTTTTGACgcaaaagacaaataaaacagtaGATGTTATGGTATAATtctgtaaaagtgtaaaagattACAAGTATAAGATTCTTAGAtccagaagaaataaaaaaaatactctaacaGTTTTAATATTGATGTTTTTAACCAGCCTGGTAACTGCTATTGAGTACATGTGTCAGTattatctaaaataaataaagctatttcaaaggaaa

Function

NR:

description
PREDICTED: protein FAM19A3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923227.2 True 1709 mRNA 0.47 5 10168385 10279934
XM_034306371.1 False 1375 mRNA 0.43 5 10214445 10279934

Neighbor

gene id symbol gene type direction distance location
mov10b.2 LOC108265909 coding upstream 90864 10056229 ~ 10077521 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding upstream 137197 10013340 ~ 10031188 (+)
cttnbp2nlb cttnbp2nl coding upstream 203289 9934292 ~ 9965096 (+)
ddx20 ddx20,LOC107556298 coding upstream 509826 9651871 ~ 9658559 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding upstream 531362 9624300 ~ 9637023 (+)
slc16a1b slc16a1,slc16a1b,LOC108425094,LOC107669643,LOC107717534,LOC107711946,LOC107591766 coding downstream 233505 10513439 ~ 10541772 (+)
kazna kazn coding downstream 351547 10631481 ~ 10681269 (+)
fnbp1l fnbp1l,LOC107757999,LOC107599010 coding downstream 463791 10743725 ~ 10790914 (+)
slc5a9 slc5a9,LOC107757988 coding downstream 595476 10875410 ~ 10883004 (+)
gclm gclm,LOC107699464,LOC107599012,LOC107657862,LOC107757997,LOC107603255 coding downstream 603601 10883535 ~ 10894051 (+)
G130285 NA non-coding upstream 21251 10085561 ~ 10147134 (+)
G130231 NA non-coding upstream 134820 10033350 ~ 10033565 (+)
G130021 NA non-coding upstream 452517 9715656 ~ 9715868 (+)
G129996 kcnd3 non-coding upstream 496050 9672067 ~ 9672335 (+)
G129971 NA non-coding upstream 565853 9600195 ~ 9602532 (+)
G130415 NA non-coding downstream 239506 10519440 ~ 10524699 (+)
G130412 NA non-coding downstream 267045 10546979 ~ 10549067 (+)
G130459 NA non-coding downstream 473866 10753800 ~ 10762869 (+)
G130492 NA non-coding downstream 582470 10862404 ~ 10862638 (+)
G130608 NA non-coding downstream 628420 10908354 ~ 10908717 (+)
LOC113532719 LOC108265185 other upstream 502692 9660815 ~ 9665693 (+)
cebpb LOC108265421 other upstream 697106 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1855729 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 2196636 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 2306815 7856004 ~ 7861570 (+)
G130390 NA other downstream 78012 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 263985 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 403144 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 426785 10706719 ~ 10741425 (+)
mrpl55 mrpl55 other downstream 590185 10870119 ~ 10874126 (+)

Expression


Co-expression Network