magoh (mgn,magoh,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138)


Basic Information

Item Value
gene id magoh
gene name mgn,magoh,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11696883 ~ 11699368 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924198.2
TGCGACTACCATGACGTCATTATGCTGCGCTGCCTGTAAGCGCGTATGCGAGTTGCTAATCGGCGGCGAGAAGATTTAAGCCATTTGTTCAGGGAAAGGTGGTGAGATAATATAGTTGTATATACTCGGGAGattttgttgcttttatttGCGCAGTTATGTCCACAAACGACTTTTATTTAAGATATTACGTGGGACACAAAGGGAAATTCGGTCACGAGTTTCTGGAGTTTGAATTCAGGCCGGACGGGAAGCTGAGATACGCGAACAACAGTAACTACAAAAATGACGTCATGATCAGGAAAGAGGCGTACGTTCACAAGAGCGTGATGGAGGAACTGAAGAGGATCATTGATGACAGTGAAATCACGAAGGAAGACGATGCTCTGTGGCCTCCTCCTGACAGGGTGGGCAGACAGGAACTGGAGATTGTCATCGGTGATGAACATATCTCATTCACAACCTCCAAAATTGGGTCTCTGATCGATGTCAACCAGTCTAAGGATCCAGAAGGCCTCAGAGTGTTCTACTACCTGGTACAGGATCTCAAGTGTCTCGTCTTCAGTCTCATCGGCCTCCATTTCAAGATCAAGCCAATCTAAGTTCAACAGTTTCTACAGACAATTAATCTAGCTTGTTTAACCTTTTCAGCGTTTTGTACAGTAATTTCTGGCTTGtctgctgttttcctttttttaaataaaacattgtcaATTTCAGAA

Function

symbol description
magoh Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of catalytic step 2 spliceosome and exon-exon junction complex. Is expressed in oocyte; oocyte stage I; oocyte stage II; oocyte stage III; and oocyte stage IV. Orthologous to human MAGOHB (mago homolog B, exon junction complex subunit) and MAGOH (mago homolog, exon junction complex subunit).

NR:

description
PREDICTED: protein mago nashi homolog

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006417 regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12877 MAGOH; protein mago nashi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924198.2 True 722 mRNA 0.43 5 11696883 11699368

Neighbor

gene id symbol gene type direction distance location
LOC113538016 NA coding upstream 88326 11597781 ~ 11608557 (+)
si:ch211-198n5.11 LOC108265604 coding upstream 100270 11588824 ~ 11596613 (+)
cdkn2c cdkn2c coding upstream 248999 11436385 ~ 11447884 (+)
elavl4 elavl4,LOC107707578,LOC107699497,LOC106613894,LOC107548120,LOC103028496 coding upstream 407965 11219551 ~ 11288918 (+)
dnttip2 LOC102796155 coding upstream 794807 10895439 ~ 10902076 (+)
spryd4 spryd4 coding downstream 15575 11714943 ~ 11716674 (+)
col2a1a col2a1a,LOC108265655,LOC107668081,LOC107585898,LOC107731244 coding downstream 38971 11738339 ~ 11763591 (+)
cry3a cry1ba,LOC108265656,LOC108441644,LOC107668038 coding downstream 66672 11766040 ~ 11791173 (+)
itpr3 itpr3,LOC108441646,LOC106572092,LOC107731245 coding downstream 103680 11803048 ~ 11839884 (+)
alas2 alas2,LOC108265738,LOC108441648,LOC107555603,LOC107745783,LOC107549233,LOC107731137 coding downstream 142215 11841583 ~ 11849987 (+)
G130960 NA non-coding upstream 144852 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 337503 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 748537 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 780258 10916337 ~ 10916625 (+)
G130611 NA non-coding upstream 785508 10911164 ~ 10911375 (+)
G131061 NA non-coding downstream 17464 11716832 ~ 11717885 (+)
G131279 NA non-coding downstream 517636 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 526784 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 820526 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 990799 12690167 ~ 12712485 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 92 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 63039 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 822757 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 955458 10706719 ~ 10741425 (+)
tmem51a tmem51 other upstream 1000052 10683078 ~ 10696831 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other downstream 6179 11705547 ~ 11714032 (+)
foxp3a LOC108265789 other downstream 279818 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 497225 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 900330 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 2005798 13705166 ~ 13791317 (+)

Expression


Co-expression Network