LOC113533124 (gpat4,LOC108426719,LOC107740984,LOC107683875,LOC102786815)


Basic Information

Item Value
gene id LOC113533124
gene name gpat4,LOC108426719,LOC107740984,LOC107683875,LOC102786815
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24408174 ~ 24430869 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925010.2
ACCCAGCCGGCTTAGTGGAGCCGGCGGTCATGTCAGGCTGAATAAACTAGAGGGATGTAGACAAAGCTGTGCGACAGCCATTTGACAAGCTGTTGAGTCGTGTTTAAAACGCCGGGGTAGAAGAAAGGACTGGATGAGAAGCTGCTCTTGACTTTATTTTACAGCCAACTTACAAGTTCTGCTGCTATAAACAAATCATGAATGACGTCTTATCATGTAAAAGCAATACACAATGGAAAGAATTCAGCTTGATCAAATTTGCACAAAACGATAGCTTTTGATTACAAGACAAGCCCCTTGTGGACTTTGGAGGCTATTTTTGGTGACAGGAGAATCTGAGACGACGTAGTTGGAGAAGAGGCCACAGTTATAGACCTCTATCCTTAGACGTTTTAAACTGAACATGGTCTGAAGACCTACAACCTGAGCTACTTTAGATCGGTTGCTTTTTTGACTTCTTTCTccctttttaaagaaagattttTGAACCAGGTTGCAGGAATGGGTCCGTTTGTGTCTCCATTTGATAACTTGCTGTGCATGTTGCTGGGCATCTCCTTCACCGTGTGGTTCACTCTGCTGCTGGTGTTCATCATCGTGCCGGCTATATTTGGCCTGTCCTTCGGCATCCGGCGGCTCTACATGAACACCCTGCTCAAGGTGTTTGAGTGGGCCACAATGCGGATCGAAAGAGGAGCCAGGGAGAAAAATCATCTTGTGTATAAACCCTATACGAACGgTATAATAGCCAAAGAGCCGACGTCTCTGGAGGAGGAGCTTAAAGAAATCCGCCGCGTTGGCAGCAGCCGGGACCTGAAtggctcctcctcctcccccacAGGCTCCTCCTATTCCTCCTCGGAGTTTGCTGTGTCAGACATCTTCTATTTCTGCAGGCGTGGCGTCGAGAGCATCGTGGATGATGAAGTGACCAAGCGCTTCACAGCTGAGGAGCTTGAGTCCTGGAACCTGCTGACACGCAGCAACTACAACTTCAGACACATCAGCACACGGCTCACGGCGCTCTGGGGGCTCGGGCTGATCATCCGCTACTGCATCCTGCTGCCTCTCAGGTTGACACTCGCCATCACAGGTGTGACTCTGTTGGTCGTCCTCACCACCTTAGTCGGATTTCTGCCCAATGGGAGgatGAAGAATTTTCTCAGTGAAAAAGTGCATTTGATGTGTTACCGAGTATGTGTGAGAGCACTTACGGCAATCATCACTTACCATCACAGTGAGAATAAGCCTAAGAATGGAGGAATCTGTGTGGCCAACCACACGTCACCCATTGATGTCCTCATACTAGCCAGTGACGGCTGTTACGCAATGGTGGGACAGATCCATGGAGGACTGATGGGAGTCATTCAGAGGTCTATGGTGAAGGCTTGTCCACACATCTGGTTTGAACGCTCTGAAGTCAAAGACCGCCATCTTGTGGCCAAAAGGTTGAACGATCACGTCGAGGACAAAAGCAAACTCCCGATCCTCATCTTTCCTGAAGGTACCTGCATCAACAACACGTCTGTGATGATGTTTAAGAAGGGAAGCTTTGAAATCGCTTCAACAATCTACCCAGTGGCCATCAAGTATGACCCTCGCTTCGGGGACGCCTTTTGGAACAGCAGCAAGTTCGGCATGGTGAATTATCTCCTCCACATGATGAGCAGCTGGGCTATTGTCTGCAGCGTGTGGTACCTCCCCATGAGCCGACAGGAAGACGAGGATGCCGTGCAGTTCGCTAACCGAGTTAAAGCAGCTATCGCCAGACAGGGCGGCCTGGTGGACCTGCTGTGGGACGGTGGCTTAAAGCGCAGCAAAGTGAAAGACACCTTTAAAGAAGAACAACAGAAACTGTATAGCAAGATTTTGGTGGGAACTCACGAAGACCGCAGTCGCTCCTGAGGAATGAAAGATGACTGAGGTGACTGGACAGGAAAGAACTTGAATCattcaatctttaaaaaaaaacctatcaGGATTGCGTCGTGAGCCAAGTCTTACATCTGTTGGTGGTAGAAGGGATTTAATTTTCAGCAGTCAGTTGCTTCACCAATTATGTTTGCGTAACCAACACAACATGATGTTGAGGTGTAATTTAATAACGTGGCCACTTTGTAAGGTCTCTAAGCGCACATTCTCTAAGGCAAACTGGTTGCTATCAACACTCTCAAAAACAACTGTGTAACAGCAggacttttgttttttgtttttaactttatGAATCCATTTTTAGCACAATTCACATcctatttatattattattattattattattatcattattattatatttcttatgttacagtcagttttattttaactttatctCTGCTGTGTGAATATATGGGTTCTGTAGATGTTTAcaggaaagaaaacataaaCTCAAATGGGTCCTCAATTATAGCTAATGCAAATTAGCTAGTACGTTATAAATGTTGTAATTTGTGCAACAGGGtcgctgaattctcaattctgattggtcaaaaggtgttgattaattttctgatagtagttctggctacacagcaaatcacaggtttatattaatgtgctcgttttaatacgttatcgtttctatagtaacaattcattcacagggacttgtatgatggacactctacataagaaacaaacattctttgttgttgtttaacaattGATATGGTTAAATTTTCTATAAGgaagtgtttatttacatttatggaaggagtctccagtgacagccAGTatattttccaccatgggaaagtcttcaggaaagaggactttgcggtttctctgtaacatga

Function

symbol description
gpat4 Predicted to enable acyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human GPAT4 (glycerol-3-phosphate acyltransferase 4).

NR:

description
PREDICTED: glycerol-3-phosphate acyltransferase 4-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13506 GPAT3_4, AGPAT9, AGPAT6; glycerol-3-phosphate O-acyltransferase 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925010.2 True 2792 mRNA 0.44 14 24408174 24430869

Neighbor

gene id symbol gene type direction distance location
foxb2 foxb2,LOC107726218 coding upstream 12330 24393579 ~ 24395844 (+)
LOC113533424 gcnt1 coding upstream 32654 24372757 ~ 24375520 (+)
pcsk5b pcsk5,LOC107691579,LOC107548272,LOC107723238,LOC107702857 coding upstream 46249 24317883 ~ 24361925 (+)
ubap2b LOC108265340,LOC108426724 coding upstream 98050 24296087 ~ 24310124 (+)
zgc:154046 zgc:154046,crat,LOC108265337,LOC108426726,LOC107722731,LOC107702859 coding upstream 130609 24264059 ~ 24277565 (+)
inpp5l LOC108265505 coding downstream 3860 24434729 ~ 24465696 (+)
LOC113533523 LOC108265504 coding downstream 44717 24475586 ~ 24482568 (+)
LOC113533128 NA coding downstream 64634 24495503 ~ 24498780 (+)
sorbs3 sorbs3,LOC108265711 coding downstream 74328 24505197 ~ 24559028 (+)
pdlim2 pdlim2,LOC108265771,LOC103022934,LOC107740981,LOC107724143 coding downstream 131062 24561931 ~ 24624156 (+)
G138280 NA non-coding upstream 44413 24362949 ~ 24363761 (+)
G138239 NA non-coding upstream 283605 24121610 ~ 24124569 (+)
G138176 NA non-coding upstream 418077 23989898 ~ 23990097 (+)
G138014 NA non-coding upstream 657806 23747463 ~ 23750368 (+)
G137651 NA non-coding upstream 1304508 23100607 ~ 23103666 (+)
G138535 NA non-coding downstream 71217 24502086 ~ 24502371 (+)
G138578 NA non-coding downstream 215910 24646779 ~ 24647451 (+)
LOC113533328 LOC108265709 non-coding downstream 300118 24730987 ~ 24783425 (+)
LOC113533216 NA non-coding downstream 417199 24848068 ~ 24849544 (+)
G138907 NA non-coding downstream 846428 25277297 ~ 25284948 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 394393 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 513449 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 651060 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 883469 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 1146183 23248348 ~ 23261991 (+)
LOC113533115 gnrh1 other downstream 701872 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 1121025 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 1478706 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 1969322 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 2131951 26562820 ~ 26567932 (+)

Expression


Co-expression Network