gpkow (gpkow,LOC107702823,LOC107575438,LOC107564457)


Basic Information

Item Value
gene id gpkow
gene name gpkow,LOC107702823,LOC107575438,LOC107564457
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23866857 ~ 23877386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925053.2
ATTACCCAGCAGTATTGCGAATAACCCTAGTAAGCAGCAAACATGGCGTCGCCGGAGCCGCAACAAGACCGCGGCGATAATGAAGAACCGTTAAAGAAAGGCGATGGAGAAACAAAGCCTGGTCCCATTTCTTTCGGTTTTAgcaaaaagataaataaagccAAAACTGAGAAAGCAGAAGAGCGAGATTTTTTAACTGGAGTCGAGGGGAAGGAACTGAAAAGCACCAAGCCGGTGGAGAAACCTAAAGAGCTCATCATTCCTCTGATCCAGAAGAACCGCTGGTACAGACACGAAGGAGTGAAGCACGAGGATGGGAAAGAAGCTCCATCCGAGCAGCAGCAGGACTCTGTGGAGTCTCAGGCCATCAAAGAGCTTATTGAAGAGTCTCAGAAGAAGCAGGAACAGTGGAAAAATGGCCCTCAGTGCGACCCGAACCTGGCCATCCCGCTGCTCATGCAGAACCAGGTGCCGCAGGGCTTCGAGGACGGGGAACACATCAGAGTGGACCTCCGACCCGAGTCGTCCACAGAGGCTGATTATGAGCAGGTTCCGGTGGAGGCGTATGGACTCGCCATGCTGAAAGGAATGGGCTGGAAGCAAGGAGAGGGCATCGGCCGCACGTTCAAACAagATGTTAAACCTATAGAACACCAGCTAAGACCCAAAGGCCTGGGTCTGGGAGCCGATCGCTCCGCCATTAAGGACCTGGAACCATCAGGGCCCCGAAGACCCCCTAAACCCGGAGAACAGAGGGAAAAAGATGACGAGGGACTAGTGCTGGGGCCTGGAGGGTGTGTACTGGTCCAGACCGGTGCTCATAAAGATCTGTATGGGAAGaTAGAGGGGGTAGACACAGATAATGCCAGAGTCGTGGTGAAACTTGCCATTGGAGGGAAATCGGTGACCATCAGCCAGTACTCGCTACGCCTCGTGTCTCGAAAAGAATACGACAAATACAGCAAAGATCTCAGCCGCCTCAGCAAAGCCCacaaggagaaggagaaggagaaagagcgAGAAcatgaaaaggagagagagcgagagaaagacagagcgCGTGACCAGCAGAGACGAGAAGAGAAAGCGAACGGGAAAGACGAGCGGCGGAGAGATCGGCacgtggagagagagaaggaacgAGAGAACGATCGAGAGCGTGAccagaggaagaggaagcacAAGGAAACGGATACGGACAGAGAGAAACCTCCTCCTATGAAGGAGTCTCGCTCGTCTCCGCCTGCCTGGCTCCAGAGAGACCTCCGTGTGCGCTTCATAGATAAAAGCTTTAAAGGAGGCAAATACTACAACTCTAAGATGAGAATCGAGGACGTCCTCACGCCACACATCTGTGTCTGTCGCACAGAAGAAGGACGACTGCTGGATGATGTCAAACAAACGATGCTTGAGACCATCGTGCCCAAAGGTGACGCAGACTCCATTATGGTGGTGCTGGGAGAACACCGAGGACAGGTGGGACACATTCTAAAGCGTGATAAGGAGAAGTGTAGGGCCATGGTGCAGCTGGAGCGCTACGAGGAGAAGGTCTTCACTCTGGACTACGACTCCATCTGCCATTACGTGGGAGATCACTGACAAACACCTCACATAAACAACCAAATACCCTGCAGTGACCAAGACGACTGTCTCTGCTCGCCCCGGAGACGACTAGACTGTCCACAACTAGATTTATTCACTCAGACATGCTACATCACATGGATCATGTGAACACTGTTGCCCCCTCCTTGTGGCTTTTCTTCAGTCTGGGATTTCACTTATGGCTTAATGTTCTTAAAGCTGCATCCTGGTGGCTGGAGAGACTGCAGAAAACATCTCAGATCAGTAACACCACTATTTGGGGTGCAGTTTGGGATGTTCTTCACTGTCAGCTGTACATAATGATGTTCTCACCTCATCAAGATGCTGAAAACAGACTGTAGCAGATTTGAGATTTTTGTAAATGTGCCATAATCACTGCCatataagatgttttttttataataaaaatcttttattggTCA

Function

symbol description
gpkow Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Orthologous to human GPKOW (G-patch domain and KOW motifs).

NR:

description
PREDICTED: G patch domain and KOW motifs-containing protein

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K13101 GPKOW; G patch domain and KOW motifs-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925053.2 True 2024 mRNA 0.50 11 23866857 23877386

Neighbor

gene id symbol gene type direction distance location
renbp renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049 coding upstream 146000 23711642 ~ 23720857 (+)
si:ch211-218o21.4 LOC108265477 coding upstream 155542 23706068 ~ 23711315 (+)
zgc:162200 LOC108265478,LOC108442080 coding upstream 163737 23682257 ~ 23703120 (+)
rbm39b LOC108265754,LOC108442077,LOC105906838,LOC105007609 coding upstream 215715 23642841 ~ 23651142 (+)
slc12a5b slc12a5b,LOC108442076,LOC108265753,LOC107550951,LOC105007608 coding upstream 226632 23573322 ~ 23640225 (+)
timm17b timm17b,LOC107722912 coding downstream 5765 23883151 ~ 23889055 (+)
cacna1fa cacna1f,LOC108426741,LOC107756819 coding downstream 18679 23896065 ~ 23919350 (+)
sypb syp,sypb,LOC108426646,LOC107678440,LOC107553146,LOC107664463 coding downstream 42891 23920277 ~ 23931516 (+)
plp2 plp2,LOC108426740,LOC107682436 coding downstream 57738 23935124 ~ 23951250 (+)
prickle3 prickle3 coding downstream 79122 23956508 ~ 23989190 (+)
G138014 NA non-coding upstream 116489 23747463 ~ 23750368 (+)
G137650 NA non-coding upstream 707350 23095798 ~ 23159507 (+)
G137651 NA non-coding upstream 763191 23100607 ~ 23103666 (+)
LOC113533633 NA non-coding upstream 860461 23002703 ~ 23006396 (+)
G137626 NA non-coding upstream 903503 22963131 ~ 22963354 (+)
G138176 NA non-coding downstream 112512 23989898 ~ 23990097 (+)
G138239 NA non-coding downstream 244224 24121610 ~ 24124569 (+)
G138280 NA non-coding downstream 485563 24362949 ~ 24363761 (+)
G138535 NA non-coding downstream 624700 24502086 ~ 24502371 (+)
G138578 NA non-coding downstream 769393 24646779 ~ 24647451 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 109743 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 342152 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 604866 23248348 ~ 23261991 (+)
LOC113533432 gpr153,LOC107693426 other upstream 1229868 22594534 ~ 22636989 (+)
LOC113533405 NA other upstream 1357363 22507626 ~ 22509494 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 13030 23890416 ~ 23894725 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 134196 24011582 ~ 24013781 (+)
LOC113533115 gnrh1 other downstream 1255355 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 1674508 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 2032189 25909575 ~ 25916807 (+)

Expression


Co-expression Network