eif2d (eif2d)


Basic Information

Item Value
gene id eif2d
gene name eif2d
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23534596 ~ 23546658 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925085.2
GCATTGCAGCCACGCGCTTATGCTTGCAGTGGTTGGCTAATGAAATGTAGCATGTTTGATACAAGATGTCACAAGTGTAATTCAGGCATTAGGTGGTTGTATTTCTTTAACTagttattacaaataaaatacacaacagGATGTTTGCAAAAGCGTTTCGTGTGAAGTCCAATACCGTTATCAAAGGATCCGACAGGAGGAAGCTGAGAGCGGACGTCTCCGCTGCCTTTCCGTCCCTGTCTGCTGATGACCTCAACGAGCTCGTACCGAACAAAGAAGAGCTGAACGTCGTAAAAATCTACGCACACAAAGGAGATGCTGTCACTCTGTATGTGCTCCACAGGAACCCAGTGTTCTTCCAGCTGGAGAAACAGCTGTACCCTACAGTGTACACACTTTGGCAGTATCCTGATCTGTTACCTGCCTTCACAACATGGCCTCCAGTGGTACAGAAATTAACTGGCGGGGCAGATCTGATGCTGCCAGGAGTAGTGGTGTCCTCTACAGGGCTACCAGACGTAAATCAGGGGGACAGCTGTGCTGTTAATGTCGTGTCCAACAGAGCTCCAGTTGCTGTGGGTACAGCGGCCGTGTCGAGCAGAGAGATGAGGACCAGTGGGATGAAGGGAAAAGGAGTAAATGTGTTACACACGTACATGGACCAGCTGTGGGCTTTTGGGGAGAAGACCACACCTCCTGTCATCCCAGTCACTGATCCTTCAGTCCAGGCAGAGGCAGACATGGACGGAGAGGAAAGTGGCGAAGAGGGAATGGAAGATTTGGCTCAGGAGAGCGCAGTACAGAAAGACTCTGGCACGGCTGCAGTGGAATCGTCTTGTCAGAACCTGCAGGATCTCAGTCtcggagagggagagaaagaggaggagacgGAGGAGGTGCAGGGAGAACAGGAGGATTCGAGATCTCCACAAGAGCAGATGGATTCTctgttgtttcagtgtttcctcCATGCCCTGAAGAGTAAAGTGAAGAAGTCGGAGCTCCCCCTGCTGACCGGCACCTTCCTGCGCAAGCACATGGGCTCATGCTGTCCTAAAGGAAAAAATCTTGACATCAAAAAATCCAGCTATAAAAAGCTCTCGAAGTTCCTGCAATCTATGCAGAAGGAGCACAATCTGGTTCGTGTAAAGGAGCTGAGTAAAGGAGTGGACAGCATTGTAGAGGTCGACTGGAAGAACGCTGAGTTGTGTTCTTTCTGCGTGCCGGAAGACTGGGAGCCTCCAGAGGAGTGTGTTGAGGATAGAGAGAGCTGTGCGGAGGTCTATAAGCCCCCTGAAATCACCCCACTTTACGGGGTCACCACACGCCTAGAGCCACTATTCCTGGATGCGcagaaaaaAAAGGGTGCAGTGCTACAGGCTGGTGAAGTGAGGAGCATCATCACCGATTATGTGAAAAGAAACGAGCTTGTTCATGAAACCAACAAAAGTTATGTGAACATCAACCCTGTGCTGTGTGACTGTTTACTGGAAAAATCTGAATATCAGGAGGTCGAGACGTTAAAATGGGACGATCTCTTCAGCCGGACTCTGAGCAGGATGCAGTCGTGCCATCAGCTGCAGTTTCCAGGCCAGGCTCCTGTGGTCCGGAAAGGGCAGGTGGAGCCCATCGATATCACTGTAGCCTCCAGAGGCTCTAACAAGAAGGTGACGATAATAAAGAACTTGGAGGTGTTCGGTGTAGAGCCAGCGGTGGTAGCTGACACACTGCAACATCTAGTCCAGGCCAGTTCTGTCCTCCACGATGTCCCTGGAGCCAAAGAGCGGCAGCTGGTGCAGATCCAGGGCAACCAGGTGCATCACGTCGGCAAACTGCTACTAGAGCAATATCAGATCCCTCGCAAATACATCCAGGGTTTGGACAAAGCTCCGAAAGCAGGCAAGAAGAAATAACACCCGTCCCACACTAGTGACTGTACATTGCTGTAACATAGACATGAACTACTGGCCTAATTCATTATTTGTGTACTAAGACTACTCCACCGCCGTGATGTTTAATCAACAGAGCTGTACTTTACATTCAATcatggaataaaatatttgaataaaacaaattgGACAGCTT
>XM_034306308.1
GCATTGCAGCCACGCGCTTATGCTTGCAGTGGTTGGCTAATGAAATGTAGCATGTTTGATACAAGATGTCACAAGTGTAATTCAGGCATTAGGTGGTTGTATTTCTTTAACTagttattacaaataaaatacacaacagGATGTTTGCAAAAGCGTTTCGTGTGAAGTCCAATACCGTTATCAAAGGATCCGACAGGAGGAAGCTGAGAGCGGACGTCTCCGCTGCCTTTCCGTCCCTGTCTGCTGATGACCTCAACGAGCTCGTACCGAACAAAGAAGAGCTGAACGTCGTAAAAATCTACGCACACAAAGGAGATGCTGTCACTCTGTATGTGCTCCACAGGAACCCAGTGTTCTTCCAGCTGGAGAAACAGCTGTACCCTACAGTGTACACACTTTGGCAGTATCCTGATCTGTTACCTGCCTTCACAACATGGCCTCCAGTGGTACAGAAATTAACTGGCGGGGCAGATCTGATGCTGCCAGGAGTAGTGGTGTCCTCTACAGGGCTACCAGACGTAAATCAGGGGGACAGCTGTGCTGTTAATGTCGTGTCCAACAGAGCTCCAGTTGCTGTGGGTACAGCGGCCGTGTCGAGCAGAGAGATGAGGACCAGTGGGATGAAGGGAAAAGGAGTAAATGTGTTACACACGTACATGGACCAGCTGTGGGCTTTTGGGGAGAAGACCACACCTCCTGTCATCCCAGTCACTGATCCTTCAGTCCAGGCAGAGGCAGACATGGACGGAGAGGAAAGTGGCGAAGAGGGAATGGAAGATTTGGCTCAGGAGAGCGCAGTACAGAAAGACTCTGGCACGGCTGCAGTGGAATCGTCTTGTCAGAACCTGCAGGATCTCAGTCtcggagagggagagaaagaggaggagacgGAGGAGGTGCAGGGAGAACAGGAGGATTCGAGATCTCCACAAGAGCAGATGGATTCTctgttgtttcagtgtttcctcCATGCCCTGAAGAGTAAAGTGAAGAAGTCGGAGCTCCCCCTGCTGACCGGCACCTTCCTGCGCAAGCACATGGGCTCATGCTGTCCTAAAGGAAAAAATCTTGACATCAAAAAATCCAGCTATAAAAAGCTCTCGAAGTTCCTGCAATCTATGCAGAAGGAGCACAATCTGGTTCGTGTAAAGGAGCTGAGTAAAGGAGTGGACAGCATTGTAGAGGTCGACTGGAAGAACGCTGAGTTGTGTTCTTTCTGCGTGCCGGAAGACTGGGAGCCTCCAGAGGAGTGTGTTGAGGATAGAGAGAGCTGTGCGGAGGTCTATAAGCCCCCTGAAATCACCCCACTTTACGGGGTCACCACACGCCTAGAGCCACTATTCCTGGATGCGcagaaaaaAAAGGGTGCAGTGCTACAGGCTGGTGAAGTGAGGAGCATCATCACCGATTATGTGAAAAGAAACGAGCTTGTTCATGAAACCAACAAAAGTTATGTGAACATCAACCCTGTGCTGTGTGACTGTTTACTGGAAAAATCTGAATATCAGGAGGTCGAGACGTTAAAATGGGACGATCTCTTCAGCCGAACACACTTGGCTGTGATTGCAGGACTCTGAGCAGGATGCAGTCGTGCCATCAGCTGCAGTTTCCAGGCCAGGCTCCTGTGGTCCGGAAAGGGCAGGTGGAGCCCATCGATATCACTGTAGCCTCCAGAGGCTCTAACAAG

Function

symbol description
eif2d Predicted to enable translation initiation factor activity. Predicted to be involved in formation of translation preinitiation complex. Predicted to act upstream of or within translational initiation. Orthologous to human EIF2D (eukaryotic translation initiation factor 2D).

NR:

description
eukaryotic translation initiation factor 2D isoform X1

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15027 EIF2D; translation initiation factor 2D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925085.2 True 2085 mRNA 0.49 15 23534596 23546658
XM_034306308.1 False 1687 mRNA 0.50 13 23534596 23545726

Neighbor

gene id symbol gene type direction distance location
LOC113533564 ywhaba,LOC103023259,LOC107708121,LOC108412308,LOC107584065,LOC108414621,LOC107595428 coding upstream 21037 23510190 ~ 23513559 (+)
LOC113533186 LOC108265406,LOC103023575,LOC108414617,LOC108433700,LOC100694607,LOC102788290,LOC103460371,LOC103156966 coding upstream 24742 23505084 ~ 23509854 (+)
eif2s2 eif2s2,if2b,LOC107739644,LOC107756850,LOC107566961,LOC108414623 coding upstream 31086 23496631 ~ 23503510 (+)
LOC113533263 chmp4b,LOC108265407,LOC108414620,LOC103026801,LOC107573971,LOC107086700 coding upstream 38719 23490838 ~ 23495877 (+)
LOC113533314 NA coding upstream 49730 23478294 ~ 23484866 (+)
slc12a5b slc12a5b,LOC108442076,LOC108265753,LOC107550951,LOC105007608 coding downstream 26664 23573322 ~ 23640225 (+)
rbm39b LOC108265754,LOC108442077,LOC105906838,LOC105007609 coding downstream 96183 23642841 ~ 23651142 (+)
zgc:162200 LOC108265478,LOC108442080 coding downstream 135599 23682257 ~ 23703120 (+)
si:ch211-218o21.4 LOC108265477 coding downstream 159410 23706068 ~ 23711315 (+)
renbp renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049 coding downstream 164984 23711642 ~ 23720857 (+)
G137650 NA non-coding upstream 375089 23095798 ~ 23159507 (+)
G137651 NA non-coding upstream 430930 23100607 ~ 23103666 (+)
LOC113533633 NA non-coding upstream 528200 23002703 ~ 23006396 (+)
G137626 NA non-coding upstream 571242 22963131 ~ 22963354 (+)
G137613 NA non-coding upstream 581301 22951965 ~ 22953295 (+)
G138014 NA non-coding downstream 200805 23747463 ~ 23750368 (+)
G138176 NA non-coding downstream 443240 23989898 ~ 23990097 (+)
G138239 NA non-coding downstream 574952 24121610 ~ 24124569 (+)
G138280 NA non-coding downstream 816291 24362949 ~ 24363761 (+)
G138535 NA non-coding downstream 955428 24502086 ~ 24502371 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 9891 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 272605 23248348 ~ 23261991 (+)
LOC113533432 gpr153,LOC107693426 other upstream 897607 22594534 ~ 22636989 (+)
LOC113533405 NA other upstream 1025102 22507626 ~ 22509494 (+)
LOC113533283 rbsn other upstream 1410845 22092595 ~ 22123751 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 203759 23750417 ~ 23757114 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 343758 23890416 ~ 23894725 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 464924 24011582 ~ 24013781 (+)
LOC113533115 gnrh1 other downstream 1586083 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 2005236 25551894 ~ 25558731 (+)

Expression


Co-expression Network