LOC113533168 (LOC108265115)


Basic Information

Item Value
gene id LOC113533168
gene name LOC108265115
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19931379 ~ 19939003 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925094.2
GACGCTCCAGTTAAAACACTCGTGGATCGATTGCTCAGGACTGCCGCATCCTTTCCCCCAAAAAGCCTGGCATCTTCAATAGACTCTCTCCCCTCCTCGCTCTTAACAGGCAAAATGGATTACTGAGGAAGGTAAAAGAAGCTGAAGGCTCAGATAATATGATGATTCTATGCTCATGCAACATCAGGACCCCCTCATACTATGAGGACTGGATGAGGAATCAAGGACAGAGGAAAGAGAGCTGAGTTGATGGACGGGAGACGGAACCGAGCCTTCCTTTAGCCTAAGTGCTAAAAGGGTCAAGAGGATGAGCCATCAGGTTTGCATAATGCAAAGTGTATGGGGGCTTCTACTGTTGTGTCCCATGTCGTGGGCATCAGAGCCGATAGTCATGGAACTGGAAGCCTCCATGCACTCCACTCTGCTCTCGGACATGCAGGCATCTGTATCCAGAGTGTCAACAGTGTCAGACTCTGTTGCAGTGGTGGGCCAGATGTTCAGGATGAGGATCCCACTGGTGTCAGAAGACTGCCGTGCCATAGACATTTTGTCTGGGATTGGCAGTGCAGCATTCCCTGAGTGGCTTTATTGGGACAGTCAGCTATGTCTTCTTCAAGGTCTACCACTAGAGGGGGATAAAGGTCTGTATCGTTTCAGCTTGTCTTCTGAAGCCTTACAAAGTCATGACGGCAGTATACATAGTCACCTACTTCTCAGTGGAACCAAATTGAGTAGTAGCTCTTACACTAACGCCCGGCAGCCAGATGTCTTTGTTATCACAGTAAACCCAGAAGATCAACAGGACATAGAATCTGCTCCAGTGGCACTGCAGACACAGTCTAATGCAACAAATGCATGTATTTGTTCAAGTGGCCAATCAGCCACTGTGTTAACTATAATCCTGGATGCTGACCTCACAAAGATGAACTCCAGGGAGCGACTGGTGTTGCTGCAGAAAATGACTCACTTTGCTAATGAGCCACCAGAGTTAATGCGGGTCATGCCAGTTATTAACAACCGTTTTTTTGATATGACTGCTTTTATGGCTGGACCAGGTAATGCAAAGAAGGTGGTGGAGAATGGCGCACTGTTATCATGGAAACTGGGTTGTGCACTTGACCAAAGCAACCTGCCTGATATTAGCGGGGTCCAGGTGCCAGCAAAAGATGGTACTATGTCAACTCTACTGGGTTACCCAGTGGTCGGCTGGTACATTGTCAATAAGAAACCTCAGGTGGTTAAGCGAGTCAGAAGACAGATCCACAACACTCCAACACCTGTGCCTTCCCAGTTTCCTCCAACCACTCACTTAGTACCTGCAGAGCGTATTGTGCCTGCTCCAGCATCCCCTTTCATTGCTCCCTCTACAAATCTGATGGTAAATCCTGCTCGTGGCCCTTTGCCCTTACCAGTTAAACCTACTATCCGTGTGCGGGATCAGATAGCTTACACACCTGTCCTGAACCAGCCTCTACCCACTCAAGTCCTAGGCAGTACCAGCACTCTCCCCTTGCAACCGACACTGACTCGCCCTGGTTATGTGGAGCCTACTGCCTCTGTTGCTCCTCCAACCACTCGCAGACCCAAGACCTCCACCTCGAAAAAGGGTAAGAAATCAAAGATCACTCCAGTACCCAGAGAGCCAAAAACTACAGATACACCTTCCAGGAGTCCACTGACTAACCAAAAGCCTCAGTTACATAACTCTCTTGGTGAAGTGCATGTGTGGGTTGGGACGTACTTTGAGGTGAAAATTCCAGCCGATACATTCTTTGATCAGGAAGATGGAAACACAGAAAAGTTACGGCTATTATTGCAACAGAATCTCTACCAGGCACTGGATCAGGGCTCTTGGATACAATTTAACAGCAGCAGTCAGCTCCTGTATGGCCTTCCTGACCAGAGCCATGTTGGCAAACATGAATTTCTAATGATAGCAATAGATAAAGAAAATTCAAGCGCCATGGATGCTTTTGAGGTTCATGTAAATCAGTGGCCAACTGATGACCAATCACCAGTTGTGTTTACTGCTCGCTTTCAAGGAGAACCTGAAATGTTGATCAACGATATCCACAAGAAAATCCTATTTTGCAAGAAACTTGCCTTTGCACTGGGTGATCGCAACAGCAGTTCTGTCACTCTAAGAAATATCTCAAGGGGTTCTATTCTGGTGGAATGGACCAATACCAGCTTGCCTAAGGATCCTTGTCCAGCAGAACAGATTCAGGAGATGTGTCGCAGGATTTCAGATGCTCAAGGTCATCCCACATCCGTCTTTCACAGTGCAATGGAGCCAGAGTTCAAACCCATTAACGTTGGGGCTCGTGGTGCCAACAAATGCCAAAGGTTCTCATTTTTGCCACTAGCAGAGGTCCCCATTCCTGTATCACCAGAGAATATTTCTGTTCCTGTGCCATCCGCAGTCACACCTTCATCCAGCTCAGGCTGGCATAACAGCGATGATGTCTACTTACACACAGTTATCCCATCTGTGGTGGTGGCTGCCCTGCTGCTTACAGCTGGTTTCATTGCAATGGTTTGCTACCGAAAGAAACGGCGTGGAAAAATGACTACAGAGGAACAGGCCACCTTCATCAAAAAGGGTGTTCCCATCATTTTTGCAGATGAGTTAGATGATGCTAAATCCCCACCCTCTTCCAGCATGCCATTAATCTTGCGTGAAGAGAAGCCACCTATGCCTCCTCCCCATTACCCCAGTTCAGCCTGTGGAGAAATCCATCAAATCCTAGAGGAATACATCTCCttcaatgatgatgatgacccCAGTGCTCCTCCTTATCAACCTCCCCCTCCTTTTACAGTTCCTATAGAAGGCAGGGGTTCTAGACCGAAGAACATGTCAGCCTACAGGTGTCCACCACCCTATGTGCCCCCTTAATAGAAAAGTAGACATCTCTCAACTGGTTCATAGtagacattttaataaaagacaTCATAATCCAAATATGGAATAGATGAAGTGACTGGTTTTGTGTGTATGGACAAAGCCCTTGATGTCAAGGCATGCTGGATTATTGTTACTCTGAATGACTGAGCAGTGCACTCAAATCTACAAAACATGGTATTCTACAGGTCCAAACTTTACAAGACCTTACATCATTCTCTGAATCATTTGGAATATCTGACGCAGTTACTACAGAGCAGTAACTAGGGTCTACAGGTTCAGAAAGAAGTTAAATCCTATACTTGCTAACCGTATTTGAAAATGACAGACTGAAATGCTCTGAAACATCTACTGCCCTGGAATGTCATGCAATCAGACGGTAAGCTCCTGAGCAGAGATGAGGCACTGCCTAAATACATTTTGTGTCTGTATAGTTgatgtttctgattttttataatgatattttttaatgtctttacTTGCCTGGAAGCAACATTTATATGGAGTATTATGTTTCTatgttatgtaaaataaaagcaaatcaCCGGTTATATCAATTTGATCATGAGCAGCGTTATAAGCAGATAGAGACATTTGTGTAAATGATTATTTCAGCCTAATATAGTAGAATCTCTTTAACCTTTGTATCATTGCAGATCAAAACCTACCTTGTCATTAAATTTGTTTATCAAAGCACTGTATAAATTAATTTGCAGATTGAAGTGCCAGACTCTGTGAAATCCTATAACCACCAGAatctttaatcacaggttttAGACAATAGGTGAGTAATTAACAAGCCTGCCGGCTCATTGTAGCTGATAAATTatccaaacatttttataacagtGAATTCTTTTGTTGATCTATCACCACTGTTAAAGATGTTTC

Function

NR:

description
PREDICTED: dystroglycan-like isoform X1

GO: NA

KEGG:

id description
K06265 DAG1; dystroglycan 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925094.2 True 3796 mRNA 0.45 3 19931379 19939003

Neighbor

gene id symbol gene type direction distance location
LOC113533655 LOC108266029,LOC108434414 coding upstream 2605 19862102 ~ 19928774 (+)
bpifcl LOC108265236 coding upstream 175733 19730623 ~ 19755646 (+)
LOC113533240 slc32a1,LOC107564828,LOC104945949,LOC107735778 coding upstream 200855 19724022 ~ 19730524 (+)
stac3 stac3,LOC108265245,LOC108411943,LOC107751515,LOC105894341,LOC107711514 coding upstream 248752 19671421 ~ 19682627 (+)
map3k12 map3k12,LOC107715569,LOC107711606,LOC107663586 coding upstream 333323 19578002 ~ 19598056 (+)
bsna bsn,LOC108265177 coding downstream 112106 20051109 ~ 20171369 (+)
LOC113533362 apeh coding downstream 249797 20188800 ~ 20209345 (+)
tlr9 LOC108265704 coding downstream 270753 20209756 ~ 20215905 (+)
wnt5a wnt5a,LOC108411772,LOC107553896,LOC107693599,LOC107750813 coding downstream 516301 20455304 ~ 20467426 (+)
LOC113533338 lrtm1 coding downstream 608302 20547305 ~ 20560196 (+)
G135466 NA non-coding upstream 214400 19716637 ~ 19716979 (+)
G135393 NA non-coding upstream 226912 19704262 ~ 19704467 (+)
G135353 NA non-coding upstream 232640 19625304 ~ 19698739 (+)
G135352 NA non-coding upstream 303551 19619315 ~ 19627828 (+)
G135363 NA non-coding upstream 315722 19614875 ~ 19615657 (+)
G135524 NA non-coding downstream 66116 20005119 ~ 20005708 (+)
G135641 NA non-coding downstream 73564 20012567 ~ 20012767 (+)
G135643 LOC107737118 non-coding downstream 75519 20014522 ~ 20014770 (+)
G136057 NA non-coding downstream 998120 20937123 ~ 20939070 (+)
G136056 NA non-coding downstream 1008301 20947304 ~ 20965468 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 29012 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 428736 19487487 ~ 19502643 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 1249447 18436185 ~ 18681932 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 1882490 18030975 ~ 18048889 (+)
G134341 NA other upstream 2634496 17296111 ~ 17296883 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 241765 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 283412 20222415 ~ 20442191 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 805577 20744580 ~ 20747856 (+)
LOC113533123 LOC108265628 other downstream 1842220 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 1886679 21825682 ~ 21859668 (+)

Expression


Co-expression Network