cep78 (cep78)



Basic Information


Item Value
gene id cep78
gene name cep78
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 24944113 ~ 24953424 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026925102.2
TAAAATCAcagaagaagacgaagaagaaaaTAAGGgcgttcattttttaaacagtcgCGGTACACCAACAACAAATCCTCCCTGGAGGCGGTTGATAAGGAAACAGCGATAACAAACAGGTGCTTACGTGAATGATGCAGGGATCTGCTCAGATGAGACGGCGAGCGGCTCAGGACTTCGAGGCCTGCTATGAGTCCTTGTGTGCCACTCAGGGCTCTGCTCCTGTAGCTGCCGTGAGGTTGGGTCTGAGCCAAGGAGTGCTGGACTTTAACGGAGATGCCATCAGTTTCCCAGACTGGGCACCTATACTGTCAGCATTAGCCATCAACAAACAGCTGCACCATGTTGGTGTCAGAAGTTGCTACCTCGCTAATCTGGGCTCTCAGGGTTCCTATAAGACCTCCATTAGGAAGAAGATTCCTGTTATCCATTCAAAGAGCATGACGTTTCAGCTTTGCAAAGCTGTGCAGAAATGCCTGGGTGTTTCACACAGCCTTAAAACGCTGCACCTGCACGGGCTgcctctgagagagagagacctcgACACACTCACTAAGGGTTTGTCCAAGAGTGTGTCACTGGAGCATTTGTCTTTGGCACACTGTCCCATTGCAGACGATGGACTAGAGACTATCTGTCAGAGTGTGAAATATTCAACAACTATTAAAACGGTGGATTTCACTGCCTGTAATATTACGTGGCAAGGTGCAGAGCATATGGCAAACATTATAAAGAACCAGGCAGTGAGGCGACACAGCACAGCGTGGGCAGAGACTTTGCGGTACAGGAAGGCGGAGTTTGAGACGATGGGGGGGCTTCGCAGGATCACATTTAACGAAAACATTCTAATCAGTGACAGAGGAGTGGCATCCCTCGCTCAGGAGCTCACAGAGGACCTgtgggtcaaagCAGTGGATCTGCAGCGGTGTGGCATCTCTAATGATGGAGCTCGTGTTCTGGAGAAAATGCTCCAGTCCAACACCACTCTGTGTGTACTGGACATCCGGAGGAACCCCCTAGTGGATAATGAGCTGGTGAAGTCTGTGATTAAGAAAGTGCTTATGAACAATAAAGGCCAGGACTCACAGTATTTATGGTTGAAGCCTCCAGCTAAAGATGCAAATGACTCGGGACAGGCGACCAGGAGAAGCACAGGAAGAGCTACCTACAGAATCGTTAAAGGCTCACGGCGGGCAGCTTCAGCACAGTGTGGAGGGAGGCCTCCTCGACCTGGCAGTACTGGCTATATCCCATGGCGCACTGCAGCACGGGCCAAACTTCAGAGGGGTCTCCCTCAGAGTGCCACAACAGCAGATCGGACCTTTCAGCATGCCTCCTCCATTCGAGTCACATTAGAGTCAGAGAGCGAGTCGGAGTCTGAGGAAAATGAAAGTGTGTCGCTAAGTGTGCGTGCACAGAGTGCTCGTGAGAACATTGGCAGCAGTCAGTTCAGACGTCTGCAGGCAGATTACAGGAGTCTGCAGGAGCAGCTGGAGGAATGCAAGCTCAGGCTCACCGAGGAGAGAAACGCAAGACTGAAAGCCACTTCTCGCATTGTCGAGCTGGAGTTAGAGAACAGTCGCCTACGCAGTGTGAATCAGTCTCTGTCAGAAGCTCACGTCAGTCACTCTGTCTTGGAGGACGAACAAGTGCTGGACAGCATTGAGGCTTCCTTTCACAAATTCCATTCCTTCCTTGACCTGCTTAAAGACGCAGGCCTGGGTCAGTTGGCATCCATGGCCGGCATTGAGCAGTCAGACTTCGGGCTTCTGAATCATCCTCAGCTCTCTTCTACACGGCGAAGAGGACATGGAGACGAGACCAGCGAGCACAGGAAAGACAGCATGGCTATAACAAACAACCTTCAAAAAACATCAAGACTTCAATCCACCACATCCTCCTCTGCAGCTTCTGTGGTCTCCAAGACCTCTCGTCATCTCCAGTCCCCACGGGAGGTGATCCTCACTCCAGCTCCGCTCCACTCCAACCCCTCACCTTCTCCTCTGGACCATCCCGAGTCTCTTCACCCACAGCAGACTGTCTCTCCAACCCATTTAAACTCAAACAGGGGGTCTGGCTCTGATAAACCCGGAGGCAGCCGGGGCTCAAAATCAGGCAGTTCAGCCAGCAGTGTCCATCTTAGTGCTCACAGTAAACTCTCCTATTCTTACAGAGAGGACTTCTCAGAGGGGAAGCTCTCTCCAGCTCTGAGCTCCAGATCTTCCAGCATGTCTCAGTTTGGTTCTGAGAGACTCAGTGTCTCTGAAGGCCAGAGGAATGCTGTTGGACTGGCTGGTCTCTAGATACAGATCACGGTTTTAATGTTTAGTGCCAACACTTGAAATGTTTACATGATAGATTGTACCATTTATAATAACCTCAGTACTCTGAAATGTAGAGTGGATGTCGGAGATGGTGTGAGataatgaaagagaaaagcGATGCTGAGGAATATATATTAATAGTTTTtgcattataaatttattagagCTAAAcactgattacagtttttactgGAATTGGTTTTTACTGAAGTTTGTTTTtagtgtttctgaatttgtgaAAACTGAATATTGCTGATAATTGAGATAGCGCCCTACTCCTTATTCCCTACAAACCAAtaagtgcattgtgggtattctGTACCTGCTAGAGTTGTAATCATTTGGCACTAACCTTCTGCTGTGCATTGCTGGATTTCATGACTGTTCAAGTTAATTTCCACTATGCTTCTGGACATTTTATGTAGCTAAAGAAATTATGCCAATGTTTTATAGTGCCTAGCTCCAAAATTattgaatgtatgaatgaatggaaatgaATTGTTTGATGTTGTTTTCAGTTGTGCTGTTGAGATGCTCGTAGAGTGTCCACTGGAAGCCATTTATAACTTGCAGGGTTTTAAGACACAGGGTTTTGTTTTATAGCTGTATATTTATTGTGATTCTTTTTGTTAATACTAGAGTTGATTGTTTCAAATGGCAGTCTTGGATATGCGTAAAATTACTGTTTACAAATTGCTGTGACCCGCCTGATGTCTGCATTTGTATCAGAATAAATGTGCTACCAAGTCATGTA

Function


symbol description
cep78 Predicted to be active in centrosome. Orthologous to human CEP78 (centrosomal protein 78).

NR:

description
centrosomal protein of 78 kDa isoform X2

GO: NA

KEGG:

id description
K16765 CEP78; centrosomal protein CEP78

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026925102.2 True 3078 mRNA 0.47 17 24944113 24953424

Neighbor


gene id symbol gene type direction distance location
vps13a vps13a coding upstream 18674 24878786 ~ 24925439 (+)
rab11fip1a LOC108265531,LOC108426714 coding upstream 232027 24693337 ~ 24712086 (+)
adgra2 adgra2 coding upstream 252673 24632224 ~ 24691440 (+)
pdlim2 pdlim2,LOC108265771,LOC103022934,LOC107740981,LOC107724143 coding upstream 319957 24561931 ~ 24624156 (+)
sorbs3 sorbs3,LOC108265711 coding upstream 385085 24505197 ~ 24559028 (+)
cabin1 cabin1,LOC107747802 coding downstream 659 24954083 ~ 25013114 (+)
tbx16 LOC108265264 coding downstream 68459 25021883 ~ 25025472 (+)
npy8br LOC108265010 coding downstream 130126 25083550 ~ 25099662 (+)
kctd9a kctd9,kctd9a,LOC107721077,LOC107678460,LOC107559451,LOC107698117,LOC107710853,LOC107553135 coding downstream 170177 25123601 ~ 25131707 (+)
ankrd39 LOC108264957,LOC108265164 coding downstream 201865 25155289 ~ 25157804 (+)
LOC113533216 NA non-coding upstream 94569 24848068 ~ 24849544 (+)
LOC113533328 LOC108265709 non-coding upstream 160688 24730987 ~ 24783425 (+)
G138578 NA non-coding upstream 296662 24646779 ~ 24647451 (+)
G138535 NA non-coding upstream 441742 24502086 ~ 24502371 (+)
G138280 NA non-coding upstream 580352 24362949 ~ 24363761 (+)
G138907 NA non-coding downstream 323873 25277297 ~ 25284948 (+)
LOC113533374 NA non-coding downstream 356481 25309905 ~ 25333613 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding downstream 467630 25421054 ~ 25428188 (+)
G138961 NA non-coding downstream 495191 25448615 ~ 25451577 (+)
G139166 NA non-coding downstream 719094 25672518 ~ 25683091 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 930332 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1049388 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 1186999 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 1419408 23514586 ~ 23524705 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 1682122 23248348 ~ 23261991 (+)
LOC113533115 gnrh1 other downstream 179317 25132741 ~ 25134258 (+)
egr3 egr3 other downstream 598470 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 956151 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 1446767 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 1609396 26562820 ~ 26567932 (+)

Expression



Co-expression Network