dgcr6 (dgcr6,LOC108265986,LOC103029434,LOC107721026,LOC108430318,LOC107572069)


Basic Information

Item Value
gene id dgcr6
gene name dgcr6,LOC108265986,LOC103029434,LOC107721026,LOC108430318,LOC107572069
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18273663 ~ 18275468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925112.2
GCGTATTTCTGAACTGCATGGCCTTCCATATTGTATAAGCCGTGACGTTGTTGACGCATGCGTGGCGGATTGAAACGAGCCGTAAAACGTAAACGCAGCTTGTGTGTGATCATGACGCGACAGGCATTATTGTGATTTAGCTTTACTGCTTAGCGAAGGGTGCAGGAACAGTTTTACGCTTCACCCGCGTCAGTACAGATGGAGAAGTACTCGGGATTGTATAAGGAGCCGACCGATGCCACGAAACAGCAGGAGAGACACTATTATCTCCTGTCCGAGCTTCAGATACTGGTCAAAGACTTGCCAAGCTGGTTTCAGCAGCGCTTGTCGTACACAACGCTGAGTGATTTGGCCCAAGCTCTCATAGATGGCACTGTGTATGAGATTGTCCAGGGTCTACTGGACATCCAGCACCTGACTGAGAAAAACCTCTACAACCAAAGGCAGAAATTACATAATGAGCACAGAGTTCTCAAGCATGAGTTGATACGGAAACAAAAAGTGGCTCTGCAGAACTGCAAATCACATAACCTCACTGTACTAAAAGCAAGCCAGCGTGCAGAAACAGAGGGTCTGGAGCAGCGTGTGAAAGATGAGCAAAGAATGATGGATGAGAAGATTGTGGCAGAGATGGATCAGAAGGTCCTGGACCAACAGAACACACTTGAGAAAGCTGGAGTTCCTGGGTTCTACATCACCACCATCCCACAGGAAGTGACAATGCAGATGAACTTACTGGAGTTGATCTTGAAGTTACAACAAAAAGAGTCTCAGTCTGGATCACTGCTTTGAAAGACATAAACCctattttgttcatatttaggTTGTCCATTGCTGTCTGCATATTAGGCTGCCTGTTGTTGTCAGTATGTGGAATGAACTGGCAGGAGTTATCCCCAAGTTTGATCATGAAAGTTGTACTGGGTCTATGGGGACACAGAGTACTTGGTAAGAAATGTTAGCTGCCCTGCTGCcttgaaaaatattaattttcagtTTACTCATGCAACATTTTCTAATCCCATCTCCAATCAAATGATAATTGGGGGTGTTTACCCAGGCAGTATCTGATGCATCATTGCCTAGTCATTGTTCACCAGAAGCTCTTGACTATTATAGTCTATAGTACCACCAtattaaagcaataaatatCAGTGAGACTTTTCACTGTCAAGAATGCATGTCAGCATGCTCACAAATgtgggaaaataaaacaaaaaaaatcatggagcTGAGCATCTCTA

Function

symbol description
dgcr6 Orthologous to several human genes including DGCR6L (DiGeorge syndrome critical region gene 6 like).

NR:

description
protein DGCR6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925112.2 True 1244 mRNA 0.44 5 18273663 18275468

Neighbor

gene id symbol gene type direction distance location
rpl6 rpl6,LOC107699672,LOC107671003 coding upstream 14939 18252746 ~ 18258724 (+)
acaa2 acaa2,LOC107671002 coding upstream 21959 18241929 ~ 18251704 (+)
vsig8b LOC108265910 coding upstream 58520 18204157 ~ 18215143 (+)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC106585548 coding upstream 82068 18144047 ~ 18191595 (+)
plat plat coding upstream 155588 18087941 ~ 18118075 (+)
vgll4l LOC108265912 coding downstream 16021 18291489 ~ 18297481 (+)
lmx1bb lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding downstream 868079 19143547 ~ 19200105 (+)
zbtb34 LOC108265239 coding downstream 970280 19245748 ~ 19264636 (+)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327,LOC107723240 coding downstream 995158 19270626 ~ 19389662 (+)
LOC113533125 LOC108265174 coding downstream 1123270 19398738 ~ 19404045 (+)
LOC113533181 NA non-coding upstream 813 18271945 ~ 18272850 (+)
LOC113533180 NA non-coding upstream 1899 18270496 ~ 18271764 (+)
G134655 NA non-coding upstream 151502 18121879 ~ 18122161 (+)
G134598 NA non-coding upstream 189184 18074135 ~ 18084479 (+)
G134604 NA non-coding upstream 234357 18031925 ~ 18039306 (+)
LOC113533555 NA non-coding downstream 120393 18395861 ~ 18416432 (+)
G135076 NA non-coding downstream 457930 18733398 ~ 18733630 (+)
G135085 NA non-coding downstream 537022 18812490 ~ 18812710 (+)
LOC113533586 NA non-coding downstream 594949 18870417 ~ 18873621 (+)
G135090 NA non-coding downstream 607900 18883368 ~ 18883781 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 224774 18030975 ~ 18048889 (+)
G134341 NA other upstream 976780 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1404895 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 1535679 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 1651897 16580257 ~ 16621766 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 160717 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 1212019 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1550330 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 1905300 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 1946947 20222415 ~ 20442191 (+)

Expression


Co-expression Network