LOC113533186 (LOC108265406,LOC103023575,LOC108414617,LOC108433700,LOC100694607,LOC102788290,LOC103460371,LOC103156966)


Basic Information

Item Value
gene id LOC113533186
gene name LOC108265406,LOC103023575,LOC108414617,LOC108433700,LOC100694607,LOC102788290,LOC103460371,LOC103156966
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23505084 ~ 23509854 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925124.2
TGGTGTCCAATGCGCATGCGCACAGCAAGAGCGATTCAGCTGGTCGGTGTTGGAGCAGAAATGGCGGCGctccggctgtgtgtgtggcggTCTACCGGCAGAGCTTTACTCCACTCTAAACATCCAGCTCAGTTTTCTCGAGCAAATATATCCTTTGCCAGTCTGTCCAAGGGAAGGAAAGCAGCGATCTCTACTCTGGGTGTGTTGACAGCGGGAGGTGCCGGACTTGCACTGATTTTACATCAGTCAGTGAAAGCCTCTGAGCTGGAGCTACATGCGCCGTCTTATCCATGGAGCCATGGTGGCATGCTGTCTGCTTTAGACCATGCCAGTATCCGACGTGGGTACCAGGTGTACAAGCAGGTGTGTTCAGCCTGCCACAGTATGGAGTACCTGGCCTTCCGAAACCTGGTCGGAGTGTCACACACAGAGGACGAGGCCAAGGCCCTCGCTGAGGAGATTGAGGTAGTAGATGGTCCAGATGAAACAGGAGAGATGTTCACTCGTCCTGGGAAACTGTCTGATTACTTCCCAAAGCCGTACGCCAGCCCGGAAGCTGCCCGTGCCGCTAACAATGGAGCTCTTCCCCCTGACCTCAGCTACATTGTTAATGCCAGGCATGGTGGAGAGGACTATGTTTTCTCACTGTTGACTGGTTACTGTGATCCCCCTGCTGGTGTGTCTCTGAGGGAGGGACTCTACTACAACCCCTACTTTCCTGGCCAGGCCATCGGCATGGCTCCGCCCATATATAATGAGATCTTGGAGTACGACGATGGCACACCAGCCACAATGAGCCAGGTGGCTAAAGACGTGTGCACTTTCTTGCGCTGGGCAGCTGAACCAGAACACGACCAGCGTAAAAAAATGGGCCTTAAGCTGCTTATGGGCTCAGCAATCATCCTGCCGCTGGTGTACTATCTGAAGAGGCACCGGTGGTCTGTACTTAAGAGCAGGAAGATTGCCTATAGGCCACCAAAATAAACCTGAACCACGATCAAGTCAGACAAGACTTTGCATCCAGTCTGTCATCCGCTTTGTATAAAGGGACATTCCGCTTTGTTTAGAGGGAATGATTTCTGACATTTCTAATAACTCCAGGAGTAAAGACTATCAACACTCGACGAATTCAGGCTCAGTGTGAGCCAATGGACCAGGAGGGCCAGTTATGACATATACATGTTCCTGTTAATATGTAATATCTTGGTGTGAATCTAATAAACCTGTATTTTCAACGTG

Function

NR:

description
PREDICTED: cytochrome c1, heme protein, mitochondrial-like

GO:

id name namespace
GO:0005506 iron ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00413 CYC1, CYT1, petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925124.2 True 1239 mRNA 0.51 7 23505084 23509854

Neighbor

gene id symbol gene type direction distance location
eif2s2 eif2s2,if2b,LOC107739644,LOC107756850,LOC107566961,LOC108414623 coding upstream 1574 23496631 ~ 23503510 (+)
LOC113533263 chmp4b,LOC108265407,LOC108414620,LOC103026801,LOC107573971,LOC107086700 coding upstream 9207 23490838 ~ 23495877 (+)
LOC113533314 NA coding upstream 20218 23478294 ~ 23484866 (+)
LOC113533316 NA coding upstream 43658 23437236 ~ 23461426 (+)
LOC113533315 NA coding upstream 88721 23407805 ~ 23416363 (+)
LOC113533564 ywhaba,LOC103023259,LOC107708121,LOC108412308,LOC107584065,LOC108414621,LOC107595428 coding downstream 336 23510190 ~ 23513559 (+)
eif2d eif2d coding downstream 24742 23534596 ~ 23546658 (+)
slc12a5b slc12a5b,LOC108442076,LOC108265753,LOC107550951,LOC105007608 coding downstream 63468 23573322 ~ 23640225 (+)
rbm39b LOC108265754,LOC108442077,LOC105906838,LOC105007609 coding downstream 132987 23642841 ~ 23651142 (+)
zgc:162200 LOC108265478,LOC108442080 coding downstream 172403 23682257 ~ 23703120 (+)
G137650 NA non-coding upstream 345577 23095798 ~ 23159507 (+)
G137651 NA non-coding upstream 401418 23100607 ~ 23103666 (+)
LOC113533633 NA non-coding upstream 498688 23002703 ~ 23006396 (+)
G137626 NA non-coding upstream 541730 22963131 ~ 22963354 (+)
G137613 NA non-coding upstream 551789 22951965 ~ 22953295 (+)
G138014 NA non-coding downstream 237609 23747463 ~ 23750368 (+)
G138176 NA non-coding downstream 480044 23989898 ~ 23990097 (+)
G138239 NA non-coding downstream 611756 24121610 ~ 24124569 (+)
G138280 NA non-coding downstream 853095 24362949 ~ 24363761 (+)
G138535 NA non-coding downstream 992232 24502086 ~ 24502371 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other upstream 243093 23248348 ~ 23261991 (+)
LOC113533432 gpr153,LOC107693426 other upstream 868095 22594534 ~ 22636989 (+)
LOC113533405 NA other upstream 995590 22507626 ~ 22509494 (+)
LOC113533283 rbsn other upstream 1381333 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 1645416 21825682 ~ 21859668 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 4732 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 240563 23750417 ~ 23757114 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 380562 23890416 ~ 23894725 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 501728 24011582 ~ 24013781 (+)
LOC113533115 gnrh1 other downstream 1622887 25132741 ~ 25134258 (+)

Expression


Co-expression Network