vgll4l (LOC108265912)


Basic Information

Item Value
gene id vgll4l
gene name LOC108265912
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18291489 ~ 18297481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925166.2
CTTTTGCCATGTATACACAGGATATTCAAAACATACACAAGATGAATTAAACAGTATTCTACATGTTTACAGTTTTACTATTAATTCCATATTGGAGAAGTTAAGGACACTAGAGGGGTGACAAATAGAATGTAGTTCACAGCTTCTTACTAGACTCCTCCCTTAAGGAATCTGTGGAAGTAGCATCTTGGAAACAGAAGCACACAAAGAACCAAGGAGCAGGGGAAAGGAGGTTGGACTTGATACAGCCAATGAAAACTCTGGAAGACAACACAGAGCAGAAGCCACAATCCTTATACAGAGTGCAGTGAAGATCCTTACTGATCCTAACCTTTACTATTACTTACGGTGTCAGTAATCGTAGAGCTCAGGTGGAGTTCCTTTGCCAGCCATTGCCAAGGGCCCTGAACAACTAGAAACCAAGGATCTGGAGCCATGGCTGTCACAAATTTCCATTACATCACCCGGATGAGCAGTGGTTTCAAAGTTTACATCCTAGAGGGTCAGCCACACCTGAGGAGTGAGGACCGGTTCCGTCACATAACCAGTGACAGAATCAGAGTGACTGCTGCTCACCCATTCAAACATAAGCACAGTTCAGAACAAGGACGGACACTGGAGGAGAGAAGAGAGAGGGCTCTTAGCAAGAGCCTGGTCAATGCTGACAGGACATCATCACGGTTCAACGTGCCTGAGAGTCCTACATCCACCTGGAGCCCCACAGCAAGTCCAGCTCACCTTTTCTCTAGTGCAGTTATGGATGAGCCACTTGCCCTTGTCAAGAAAATTCACCAggagacagaggagacagaagacaaaaacaaaaaaactgcagtcCGACACATACAGGTTCGTCCCTCAGTGATCACATGTGTCTCATCAACAAAGTCAGTCTGTATGCCTGAAGATGGTTGCAAGCACTCCACTGTTATAACACAGCACAGTTATGATAACGTGGAGGAACATTTCCAGCGGAGCCTTGGGGTGAACTATCAGAAAGGTTCCTCTAAGCAAATCTCCATCAGCGTGTCTGTGGATGACCACTTTGCCAAGGCCCTTGGAGAGAAGTGGCTACAGCTCAAAGCATCTTCTTCCGCTTGCAGTTCATCTTCCTCACAGTCAGCATCTTCTTCATGTCTACCCAGTAATCCCACCTTCATCCACTCACCTGGTTATGGCCAGAGCCCTAAAAGAGCTCGCAAAGATTCTGTCAGCCCAACTACAGCCACATCCAGCATGTGGTCAGGGAAATGAAACTGGAGGAAAAAACGTTTTCTAAATGCATAATGGACTTGTGAGGCTTTCGCATAGAACCACATTATGTGTGATCACTGCAGCTGAATAAAATGCCAAAAGCATGCAGTTAAACAACAGAGTGATGGGATAGTGATGCAATATTGAGCATCACTAGTAAGGATTCaggtatctctgggattttctTTGGAGGATCTGATCGCTATATGTTCTAACTTCATGTATGGAAATACATGGTGTCTGTGTATTGCTGGTTCAGTTATAATCagttagtaattttttttcattactttttgTAGTCCTTGATTGcactgataataaataatattattaaattggGGAGTTTGCCAACACTCTAATGTTATATATGTCTGTAGGTCCCATAGTCAAATAATGGTAccatgcaaaaagaaaaaaaacaaacatttgtgaCTATACTGTTACAATGCTGTAGTAGTAAGAAAAGGGTTAGCATCAATAgctaatatttgtatattgctTATTGCTCTGTGGACCagattaaaaattttaaaaaaggggcATTTAAAACCCGCTACacaaacaaactttaaaaattttCAGAATAAAATGCCACAGAggttaatttgtattttaatgtaactttttaatgtttttaaattaatgtaagaattaatgtgtttttgtgggttttctccaggttcccacctcctgaaaacatgccagtaggtgggtTGGTAACTCtcaattgcccctaggtgtgaatgagtgtatgagtgtttgTGATGGACAGGAGTCCCAGCCAGGGTGTATACCTGCCTTATGCTCATTGTCTGGATCCATCACAACCCTTGTATCCAAAACTTGCTCTTACTTCTTTGGTGTCTCGTATagatgtttaaaagaaaaaaaaaacatattctcaAAAAGACAAGTTCTCACCTGTAAAATTGTCATTCAGAACAAAAGTCTGCACTAtaattcttttcatttattaattcattcatctttgatTGGGTAATACCAGGAGCATGTGGTATTACAAAATTCCATTTACTCATGAACTATAGCTTTTGATATCATGCAGACCTTTATGAGTGACTCCATGTACACCTTTGAACACAGTTGAAAGGGCAACCAAATTATTGTTCTGATCCACACATACCGacgcaaacacacaaaacagatttttagaGAGAACTTGTCAACTGATTTGATTTGAACAAATATTTGGATACAGTAGAAACACAGTTTAAaggctttttttcagtttgaagaaagctttttattattcgtcacatatacattatagcacagtgaaattcttttcttcacatatccagagcacagggtcagccatgatacagtgcccctggagcagagagggttaagggccttactcaagggcacaatagtggcagcttggcagtgctggcgCTTGAATGCCTGACCTTCTGAGCagtaaccactgagccaccactgcccctaTATAACAGTATTGTTTAGACTCAGCGTATCTTGTTAAAGGGAAACCAGTTTTTGTCACTTGGAGCATTTTTTACTCATCATAAGAATTCTCATGTGGCTTAGCACTGGACATGTTGTTGGGTGTCCTCATGGCATGTGGACACTCTAGGGCAGAAGTATTCCTCATGAGGAAAAAGTTTCAATATGTCTGTTGTTAGAGCTGTTGTAATGATGATCACAGGTAAATAAAATCTGATATAATTTTTGTCAA

Function

NR:

description
PREDICTED: transcription cofactor vestigial-like protein 4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925166.2 True 2971 mRNA 0.41 5 18291489 18297481

Neighbor

gene id symbol gene type direction distance location
dgcr6 dgcr6,LOC108265986,LOC103029434,LOC107721026,LOC108430318,LOC107572069 coding upstream 16021 18273663 ~ 18275468 (+)
rpl6 rpl6,LOC107699672,LOC107671003 coding upstream 32765 18252746 ~ 18258724 (+)
acaa2 acaa2,LOC107671002 coding upstream 39785 18241929 ~ 18251704 (+)
vsig8b LOC108265910 coding upstream 76346 18204157 ~ 18215143 (+)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC106585548 coding upstream 99894 18144047 ~ 18191595 (+)
lmx1bb lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding downstream 846066 19143547 ~ 19200105 (+)
zbtb34 LOC108265239 coding downstream 948267 19245748 ~ 19264636 (+)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327,LOC107723240 coding downstream 973145 19270626 ~ 19389662 (+)
LOC113533125 LOC108265174 coding downstream 1101257 19398738 ~ 19404045 (+)
LOC117595725 LOC108265174 coding downstream 1121269 19418750 ~ 19419938 (+)
LOC113533181 NA non-coding upstream 18639 18271945 ~ 18272850 (+)
LOC113533180 NA non-coding upstream 19725 18270496 ~ 18271764 (+)
G134655 NA non-coding upstream 169328 18121879 ~ 18122161 (+)
G134598 NA non-coding upstream 207010 18074135 ~ 18084479 (+)
G134604 NA non-coding upstream 252183 18031925 ~ 18039306 (+)
LOC113533555 NA non-coding downstream 98380 18395861 ~ 18416432 (+)
G135076 NA non-coding downstream 435917 18733398 ~ 18733630 (+)
G135085 NA non-coding downstream 515009 18812490 ~ 18812710 (+)
LOC113533586 NA non-coding downstream 572936 18870417 ~ 18873621 (+)
G135090 NA non-coding downstream 585887 18883368 ~ 18883781 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 242600 18030975 ~ 18048889 (+)
G134341 NA other upstream 994606 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1422721 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 1553505 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 1669723 16580257 ~ 16621766 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 138704 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 1190006 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1528317 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 1883287 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 1924934 20222415 ~ 20442191 (+)

Expression


Co-expression Network