LOC113533223 (LOC108265625,LOC108265470,LOC108265623,LOC108432118,LOC107687125)


Basic Information

Item Value
gene id LOC113533223
gene name LOC108265625,LOC108265470,LOC108265623,LOC108432118,LOC107687125
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22187820 ~ 22194724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925196.2
TGAAAgggcgacagagagagagagaaaaactcaGCTGTGATAAGTACAAGTTTAGCGTAAGGGAAGTGTGTCGATGTCAAAAGAGGGGAAGAAACTGAGTGACCAAGACAAACTGCAACTTCTTATTTCATCATGGAAGGCTTTGATGTTTCTTTGATGTTGACCAGCCGACCAGAAATCTTTGATTTTGAAGGCATCTCTATGGTGCATTATTTTACTGATGACTGGGAAAATGTTCAGAACTTCCAGGCAAGACCAGACGACATTCTCATTGCTACTTACCCCAAAGCAGGCACCACCTGGGTTTCCTACATCTTAGACCAACTTTATTTTGGCAATACAGCACCAGAGCGCCAGACCTCAGTACCCATCTACTTGCGAGTGCCTTTCCTTGAGGCAGTTATTCCTAAGATACCTACAGGGGTTGAACTAGTAAGTAATTTATCCACCACACCAAGACTCATCAAAACGCATCTACCTGTTCAGCTGGTGCCCAAGTCCTTCTGGGAACAGAACTGCAAGGTTGTCTATGTAGCTCGAAATGCCAAAGACAATGCTGTGTCTTATTTCCACTTTGAGCGTATGAATTTCATACAACCTGATCCAGGAGACTGGAACAATTTTCTACAGCAGTTCATGGACGGAAAGAAGGTGTTTGGACCTTGGCATGATCATGTGTCTGGCTACTGGGAGAAGAAGCAGACATACTCTAATCTTCACTACATGTTCTTTGAGGATATGGTGGAGAACACTGCTCGTGAGGTGGAGCATCTTTGCTCTTTCCTTGGTTTATCTACACCAacggaagagagagagaagattacAAAAAATTCCCATTTTGATGCCATGAAGCAAAATAAGATGACCAACTACTCCACAATCCCAGTCATGAATTTTTCGATCTCACCATTTATGCGCAAAGGTAAAGTCGGTGACTGGAAGAATCACTTCACCGTGGCTCAGAATGAGCAGTTTGATAAACACTACAAAGCGAAGATGAAGGACCCAACTTTAAAATTTCGAACACAGATTTAGGACATCATAAGACCTTACAATTCTTATTTACGTCCACAAATTTTATTCAGTGATcattttgcttacatttaagtTGTAAACAGCACAAACTGTAAGGAATAATAAGTACAATTTaaatatgttatcatttatatagcaacaacttacacaggcTCTTGTATAGCAGAAAATCCACATTAAGGGATTACAAAACATGTCTAATTGTGTAAATTTGGAAATTTTTATGTGAGGAGATTTACCACATTTAACACtttcggaaggagtctccagtgttaatgcttgtaacaatcagaggtcaAGCTCTTTAAGTTTTATGACATTAATACCGCTATTGGCGTTGGCAAAACACTGATATTAGAGGAATTAGACACTTTgggaaaataattcatttcGGGCTTCATATTTGGCTGCATTACaacaccccatcattgattattttttcaataacatGCCCccttgtgttttgttctttacttAAGTTACCACAAAACAACACTGTTTTCTAGAACGTCTTAGTTTTGAAATGCCTACAGAGCATTTCTCTAGCTCTTTGTCTGTAATAAACATTATCATATAAAATGGCAGTTGCAGTTATATAACAGCATCTGTCTAGATACATTCCAGCTGTATATAACTGCGGATCTGTGAATCTATTGCTGCAAATTACACACCACATGGATTTATTTCATCAACTGGCAagtctttaaatgtaaatgtaaaatactaAATTTATACTCTACTCTCACCTTGACATTGAGTATGACATGCTCCAAACTGtatcttctctcttcttcttctctaagCAAAGTTTATATAATAAAGTAACCAAGCAGGTTA

Function

NR:

description
PREDICTED: cytosolic sulfotransferase 3-like

GO:

id name namespace
GO:0008202 steroid metabolic process biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01014 SULT1A; aryl sulfotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925196.2 True 1872 mRNA 0.38 8 22187820 22194724

Neighbor

gene id symbol gene type direction distance location
LOC113533311 LOC108265623,LOC108432095,LOC108432121,LOC108265625,LOC108265470,LOC108432118 coding upstream 6329 22174129 ~ 22181491 (+)
LOC113533433 st1s3,LOC108432118,LOC108265623 coding upstream 17073 22163978 ~ 22170747 (+)
b3galt4 b3galt4 coding upstream 39487 22145089 ~ 22148333 (+)
trh trh coding upstream 84464 22100466 ~ 22103356 (+)
LOC113533243 rho,LOC107698434,LOC107747750,LOC107758318 coding upstream 279268 21903886 ~ 21908552 (+)
LOC113533222 LOC108265470,LOC108265625,LOC108265623,LOC108432118,LOC108432095 coding downstream 2025 22196749 ~ 22205160 (+)
LOC113533224 LOC108265469,LOC108432124 coding downstream 11153 22205877 ~ 22212021 (+)
qars1 qars coding downstream 57549 22252273 ~ 22266629 (+)
mtor mtor,LOC107564227,LOC107727986,LOC107594963 coding downstream 72334 22267058 ~ 22359048 (+)
exosc10 exosc10,LOC107682930 coding downstream 166066 22360790 ~ 22376465 (+)
G137017 NA non-coding upstream 38043 22148623 ~ 22149777 (+)
G136544 NA non-coding upstream 347968 21839632 ~ 21839852 (+)
G136532 NA non-coding upstream 362498 21824989 ~ 21825322 (+)
G136466 NA non-coding upstream 494118 21674858 ~ 21693702 (+)
G136433 NA non-coding upstream 825940 21360839 ~ 21361880 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding downstream 110005 22304729 ~ 22307615 (+)
G137086 espn non-coding downstream 272043 22466767 ~ 22467029 (+)
G137087 NA non-coding downstream 273910 22468634 ~ 22468839 (+)
G137088 NA non-coding downstream 276317 22471041 ~ 22471330 (+)
G137229 NA non-coding downstream 316181 22510905 ~ 22511176 (+)
LOC113533283 rbsn other upstream 64069 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 328152 21825682 ~ 21859668 (+)
LOC113533123 LOC108265628 other upstream 390012 21781223 ~ 21797808 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 1439964 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 1745629 20222415 ~ 20442191 (+)
LOC113533405 NA other downstream 312902 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 399810 22594534 ~ 22636989 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other downstream 1053624 23248348 ~ 23261991 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 1319862 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 1555693 23750417 ~ 23757114 (+)

Expression


Co-expression Network