LOC113533228


Basic Information

Item Value
gene id LOC113533228
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21674736 ~ 21687440 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925206.2
TACTTTTCATTCCTTGTTGCAAGCTGCAAAAACAACACAGTAATTGCAACCTATCTGAAGATGTCATGCAAAACTAGAGTAGAGGAGAGGCATGACCACTTCCTGCCTCTTACAGACTCATTTGTTTGACATGTAACTGACGATACACGCGTTACTCTTACACTTCTGCTAATccgaaaaaaagagagagacttaTCTACACAGCCTCGTGTCGTCGTTCTAGTTGGCTACTCCAGCCGTCTATAGGCGCTCATGCTATCATTCACCAGCCTTAAGGCAAAAACTCGCAGTGTTTAAGCTCAACAGCTTCAGGCTCTGTAAGTGTCAGTCTGCTGCTTTCAGGTGATTAATGGAGTCCAAGGGAGCACCGGAAGGCAGAAGCCGGACTGGACACCGACCAGGTCAGTGCACTCCCATGCCTTCTCCACCTTTGGGGACACTTACACTAGTGGCTGGAAATGGGACCAGTGTGGGCACAGTGATGACCTTACTGTGCCCTGTTAAGCATCGTGCCGTCAGTGGTGGCCGAATTTCCTGTGTGCAGGAAACTAACGGCACAGAGTGGACCGGGGGTACCCCTGAGTGTAAACCACTCTTATATGGAGACTATGGCTTCCGCCTGGCTGTGCTTCTGTCCATTGTCAGCGTAGCCATCATACTGTTGATGAGCATATACTTCATCACTTCATGTTTGCTGAAGAGTGTGAGAAAAGACGAAATGAGACAACTAGAAAGGGAAAGGAAGAGGGAAGCTTCCAGACTTTGGCACCAATTAAATccagaggaacagagagaatCTTTCTACAATCATAATGACAGAATCAaccacaacaacagcaacaacaacacccgcagcagcagcagcagtagacAGGAGAAACATCCAAGGTGTCATCAGAAAAACAACCCTGATCCTCTAACTATCCACCACTCACAGCCTACCCTGGGACAAATGCCCCCACCAATGCTCTGTGTATAACCAGATACATTAGAAGTACCATACAACCACATACGTCACACTTTTCACCTATTCTCTGTGGAGGGATATGACCCTAACTGGAGCAATCACCATAGAACTGAGCTATACCAACAGCATCAAGCACACATGAGGGTGCAAAGACTGGGCAGAAACTGGAGGAGCCACTTTGAAAAGGGAAACACCCACAAGATCCACAAATCTGGGGTGTATCTGTATAAAGCTTGTTCAGCAGCAATGATTGGTGAACCATTAATATACTTAATTTGAATCAACATTGCTGTGTTTTTACAATGAACTTTGGGTCCTTTAGTTTGTAATTGTTGTACCATGTGATGCAAACTTGCAAACtatgataaagaaaaaaatccagggGGAAACATAGCTGCTCTTGTAATCTAAACTAGATTTTAATCATAATCTACACACACCTGGGTATTGTTTTGAGAGGCTTCAAactattacactatatggcacatatgtgcttgttgaacatcctattccaaaggaatggcattaatatggagttggtcccccaTTTGCCGGAGCAGCAAGCctattctgggaaggctttccactagatttttgaaTGTTGCTAGGGGATTTGTGCCCGTTAACCCACAAGAGTATTAGCAGGGTTGGGCACTGTCGGGTAAGGAGGCCTGGTGTggagtcggcattccagttgaGTTGAGTGCTTCCaaatcaaccttggcaaaccatgtctttatggacctcactttgtttTGAGGGGCATTCTCATGCTGGAAtgtgtttgggcctcttagttccagtgaagggaaatcataattcTACAGCGTGCAatgacattctagacaatcgGGTGCCTCCAACTTAGTGAAAAGTttgggaaggctcacatataTGTAggggtcatggtcaggtgtccacatatagtgtagtatggcATTTTACTTTTTGAAAATCATCAATCACTAAAAATATAAGGGTAAGTGAGGTATATTACTATCATTGCAGGTGCAGTAGCCTGATAGATATGACATcttaataataattctttatatatcatatattttaaacaggaagagagaaaaaagtgaaaatgtcagcTACAACAAATAGACTACAGattgatttatatttctttgtGCATAACATCTAGACTAAGGCATAATTTAGAATAGAGTAGAACATGCTCATCTTTGTATATACATCAGCAACATGGTGGAAACTAGTCATTGTAGCCTAATATTATATAccaatactactactgctaataataataataataataataataataataataatgttggtgatgatgatgatttataatagtttttttaaGGGGTGGCAATAATTTTTGAGTGTAATCCATTGCTTGGCCTCCTTTCTAAGCTCTATATGGGACTGGTCGCCCCCAAGACCAAACTGAACACAAAAGACAGATCTGTAAAGACAGATTGTCCAGTGCTGTGGCCCCCAAACTAAAATTTCCTCTGGGATGGTTGTCTATGCCCTATTATAAGACACAGGTGTAGACTTAACTTTTTCTCCTAGACATTTGTTAATTagaatgtactgtacattcTATAGCAAACATGGCATTTAAAACATATGTATCACATAATTAATGTTGGAGAACTGACTTTATGAATCTTGGGTCATTTGGGTTTTTCTGTCATGGGTGCTCTGTGAATGTGGAGGGTCAGAAAAATCATAAACCCTTTGAGCATACTCTTCCAATTTTATATCAGTAGCTAAGCTTTTGCTGCAGTATTCAGTGCTATTTACAACTGTTTGTCCTCATTGCTTTCCCTGTTGCTGACAGTCAGGCAAAGGCAACCGATTCAGTGGAGGTTGGTTTGCTTCAAATTCCACAGATTCACAACTTTATTTAAGCTGCATAGTTTCACCAATTTGCAAAACCAAACAGGAGAGAAAttgtatgtgtattttaaataatattgggAAGTGGCCTATTAAAAATGTGCATTAGCTTCTTAAACATACTAACAACTTTAGCACTCTGACTGATATTGTATTGTAATGCATTGTATTGATATTGGATCATCaagcaaaattaaatataaacttcaTGGAA

Function

GO: NA

KEGG:

id description
K23821 SUSD3; sushi domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925206.2 True 3062 mRNA 0.41 5 21674736 21687440

Neighbor

gene id symbol gene type direction distance location
fgd fgd3 coding upstream 2311 21623985 ~ 21672425 (+)
LOC113533260 LOC108265644,LOC108442352,LOC103023429,LOC107594970 coding upstream 58653 21567910 ~ 21616083 (+)
mib2 mib2 coding upstream 112166 21489384 ~ 21562570 (+)
ubiad1 ubiad1,LOC107718257,LOC107572294 coding upstream 189779 21481381 ~ 21484957 (+)
cdk11b LOC107575169,LOC107718258,LOC108265382 coding upstream 218013 21438250 ~ 21456723 (+)
trnaa-ugc_2 NA coding downstream 684 21688124 ~ 21688195 (+)
trnaa-ugc_3 NA coding downstream 1080 21688520 ~ 21688591 (+)
trnat-cgu_3 NA coding downstream 2227 21689667 ~ 21689738 (+)
trnaa-ugc_4 NA coding downstream 2585 21690025 ~ 21690096 (+)
trnaa-ugc_5 NA coding downstream 2981 21690421 ~ 21690492 (+)
G136433 NA non-coding upstream 312856 21360839 ~ 21361880 (+)
G136429 NA non-coding upstream 327575 21346845 ~ 21347161 (+)
G136056 NA non-coding upstream 709268 20947304 ~ 20965468 (+)
G136057 NA non-coding upstream 735666 20937123 ~ 20939070 (+)
G135643 LOC107737118 non-coding upstream 1659966 20014522 ~ 20014770 (+)
G136532 NA non-coding downstream 137549 21824989 ~ 21825322 (+)
G136544 NA non-coding downstream 152192 21839632 ~ 21839852 (+)
G137017 NA non-coding downstream 461183 22148623 ~ 22149777 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding downstream 617289 22304729 ~ 22307615 (+)
G137086 espn non-coding downstream 779327 22466767 ~ 22467029 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 926880 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 1232545 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 1489118 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 1772369 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 2172093 19487487 ~ 19502643 (+)
LOC113533123 LOC108265628 other downstream 93783 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 138242 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 405155 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 820186 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 907094 22594534 ~ 22636989 (+)

Expression


Co-expression Network