ubl4a (ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643)


Basic Information

Item Value
gene id ubl4a
gene name ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25666925 ~ 25671900 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925224.2
gaaaaataaatgatgaatgagCAAACGCAGGTCAGTGATTTTGACGTCATATCCGTGGGAAGCAGTTCTTTGGAAGCTAACGTTGAAGAATTTGCTaccattagatttttttttttgctatttatttttaaacagatgtCAAGATGATCCTGACAGTTAAACCGCTTCAGGGGAAAGAATGTAACGTTCAGGTTACAGAAAACGAGAAGGTGTCGACAGTAAAAGAACTGGTGTTTGAGCGCTTGAACATACCGCCACATCAGCAGCGACTGCTCTACAAAGGAAAAGCCCTGGCAGACGAATACAGACTGAGCGATTACGCCATCGGCCCAGAGGCCAAGCTGAACCTGGTGGTGCGGCCgacaggagagagaaacagcggGGCGGCGGTCAGCAGTAATTCCACTACCACCAgtaccagcagcagcagcagcagtgggaGCACTGGAAGTGGAGTATGGCAGTTACTGTCCACCGTCCTGGCCAAACACTTCAGTCCTGCAGACGCAGCCAAAGTCCAGGAACAGCTCATTAAGgATTACGAACGTTCTCTCAGGCAGCTGAGCCTGGACGATATCGAGCGCCTGGCTGGACGCCTGCTCCACCCTGAGGCAGAGGGAATGGACACGTCATACATGGACTGAGACGAgctacagtgtatatatacgtACACACAAGAGCACACTTTAACAGCAGCAACACAGCACCCTGATGTTTGGTTAAATGTATGCGATGAGGACATTCAGGAACGACGGGACCGTAAGACCACATCAGCTTACATCAGGTTGGCCACATGTGACCGTGGCTCAgctaaaatttttaaaagaagatTCTTTCCCAGTCTTTTGAACAGTAATGAAGTGTCATGAGCAGCACTTGTATTCGCAccacatttcctttttcttgCTTTCAGATGTCCTGCCTTTTACAAATGTGATGGTCATCAgcatgctagtttttttttttaattagaaactCTTCACGAGTGAGTTAAATTCAAGACATATTAACAGACCCTGCATTCTCCTTTGAGAATGCAGAGCGTACAGAATGTCATACGTTTGTAAAAGGGATAAACCTCCTGCATTGCATACAACAGGAGCTGGTTTTATGCATCAAGGCAAACTAATGACAACATGAATACAGATTAAGCCTCGCGCATGAAGAGAGGTCGTGTTTGATTTTAGGCTGCATTCGaatactgtttttaatttgcCCTTGCCAACTTCCCCTGAACATTTCCTCATTCAGAGAATCCCTGTCACATTTTTAAGAATTGTTCCAAAACTTTAACAAACCACACTTTGTCTAATAGATGACGCATCGGAGGCTTGAGGGATCGAGTCACCAAAGTTGTACAGTTTAGGAACAGAACCTGCCCAAGATGCATTGCTGTTGGGTGTGATTTCCTTTTTAAACCAGTAAAAATTGGTGGAAGGAAATGGCATAAAAATGGTATAAGATCTGCATTGCTGCAACTACTCTATACCTCACAGAGTACATAAGTACAGTACATTATCctgctagctaattagcaggCTGGCTAGTTAGCTTGTTCACAGGAAATGGACAGGGCAGGTTGCCATGGAAATCAGTTTTGACAGCATTGTTTGTACTGCCAACAACCAAAATCTCAAACTCAAACTGAAGAACAGCGTTTTAAAAACAGTATTGAAACGCAGGGTTCATTTTACATGGATGTATTTAGCTCGAATGATCATGTGATGTATATTTCATGCTCAGCGTTTTCAGTCTACGTATGCTGCTTAATGTTATCTTTGGATGCTTTATGAACCTATTTATGATGGTCAAGGAGTTAAATTCATCACTACTGACCACAAAGTTAGTGTTGGCCCATGTATAGGTAAGCGCTCCGACTTTGtaaatactgtttattattattaaaaatgacaacgTTCACTTGA

Function

symbol description
zgc:56596 Predicted to be involved in tail-anchored membrane protein insertion into ER membrane. Predicted to be located in cytosol. Predicted to be part of BAT3 complex. Orthologous to several human genes including UBL4A (ubiquitin like 4A).
ubl4a Enables chaperone binding activity. Involved in tail-anchored membrane protein insertion into ER membrane. Located in cytosol; membrane; and nucleoplasm. Part of BAT3 complex.

NR:

description
ubiquitin-like protein 4A-B

GO:

id name namespace
GO:0071816 tail-anchored membrane protein insertion into ER membrane biological_process
GO:0006810 transport biological_process
GO:0071818 BAT3 complex cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K23388 UBL4; ubiquitin-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925224.2 True 1925 mRNA 0.43 4 25666925 25671900

Neighbor

gene id symbol gene type direction distance location
b2ml b2m coding upstream 1627 25662794 ~ 25665298 (+)
bin3 bin3,LOC107665194,LOC107678406,LOC107710841 coding upstream 60061 25563821 ~ 25606864 (+)
LOC113533497 pebp4 coding upstream 123337 25453639 ~ 25543588 (+)
LOC113533297 rhobtb2 coding upstream 220051 25435201 ~ 25446874 (+)
slc25a37 slc25a37,LOC107559458,LOC107710846,LOC107747712 coding upstream 375350 25276381 ~ 25291575 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding downstream 14305 25686205 ~ 25703125 (+)
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding downstream 91065 25762965 ~ 25804442 (+)
LOC113537824 NA coding downstream 245847 25917747 ~ 25919263 (+)
LOC117595683 NA coding downstream 266746 25938646 ~ 25940631 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding downstream 281067 25952967 ~ 25989162 (+)
G138961 NA non-coding upstream 215348 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 238737 25421054 ~ 25428188 (+)
LOC113533374 NA non-coding upstream 333312 25309905 ~ 25333613 (+)
G138907 NA non-coding upstream 381977 25277297 ~ 25284948 (+)
LOC113533216 NA non-coding upstream 817381 24848068 ~ 24849544 (+)
G139166 NA non-coding downstream 618 25672518 ~ 25683091 (+)
G139172 NA non-coding downstream 138275 25810175 ~ 25815041 (+)
LOC113546140 NA non-coding downstream 276949 25948849 ~ 25950449 (+)
G139235 LOC108265343 non-coding downstream 360694 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 840992 26512892 ~ 26519482 (+)
egr3 egr3 other upstream 108194 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 532667 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1653144 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1772200 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 1909811 23750417 ~ 23757114 (+)
LOC117597866 NA other downstream 237675 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 728291 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 890920 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 954153 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1511121 27183021 ~ 27261741 (+)

Expression


Co-expression Network